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neuTube | Software package for neuron reconstruction and visualization

Software package for neuron reconstruction and visualization. Free Software for Neuron Tracing. NeuTube is open source software for reconstructing neurons from fluorescence microscope images. The main function of neuTube is to generate a neuron structure from a 3D image with user interaction, which mainly consists of mouse clicks. It can also load SWC files from any other source for visualization or further editing. Proudly powered by WordPress.

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Software package for neuron reconstruction and visualization. Free Software for Neuron Tracing. NeuTube is open source software for reconstructing neurons from fluorescence microscope images. The main function of neuTube is to generate a neuron structure from a 3D image with user interaction, which mainly consists of mouse clicks. It can also load SWC files from any other source for visualization or further editing. Proudly powered by WordPress.
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neuTube | Software package for neuron reconstruction and visualization | neutracing.com Reviews

https://neutracing.com

Software package for neuron reconstruction and visualization. Free Software for Neuron Tracing. NeuTube is open source software for reconstructing neurons from fluorescence microscope images. The main function of neuTube is to generate a neuron structure from a 3D image with user interaction, which mainly consists of mouse clicks. It can also load SWC files from any other source for visualization or further editing. Proudly powered by WordPress.

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Download | neuTube

http://www.neutracing.com/download

Software package for neuron reconstruction and visualization. For any questions, feature requests, or bug reports, please leave a comment at the bottom of this page. We will answer or address it promptly. Build Version 1.0z (patched 2016.06.09). Example Image With One Reconstructed SWC. Qt SDK and Compiler for Windows Build. Build Version 1.0z (2015.10.14). Build Version 1.0x (2015.01.30). Build Version 1.0 (2014.06.03). Build Version 1.0z (patched 2016.06.09). Build 1.0z.2016 OS X 10.7. SHA1(neuTube win...

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Manual | neuTube

http://www.neutracing.com/manual

Software package for neuron reconstruction and visualization. Version 1.0z has been patched on Jun. 9, 2016. Locate node(s) in 2D. Change Node Type in 3D. The structure of a neuron is modeled as a tree, which is composed of a set of node. S and the edges connecting the nodes. Each node is a ball in the 3D space and it’s size is specified by it’s radius. The edges form the skeleton. Of the neuron.This simple model is also defined by the commonly used SWC. Open a file, which can be a TIFF or an SWC file.

3

FAQ | neuTube

http://www.neutracing.com/faq

Software package for neuron reconstruction and visualization. Q: How can I save reconstruction results? A: The are two ways: 1) Use ‘File Save SWC’ to save the results; or 2) in the 3D window, select a reconstruction, right click, and select ‘Save As’. The reconstruction will be saved as an SWC file. Q: Can I trace a multiple-channel image? A: Yes. But the target channel needs to be extracted first by ‘Tools Process Extract Channel’. Proudly powered by WordPress.

4

About | neuTube

http://www.neutracing.com/about

Software package for neuron reconstruction and visualization. Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147. Jinny Kim’s Lab, Center for Functional Connectomics, KIST, Korea. Proudly powered by WordPress.

5

Tutorial | neuTube

http://www.neutracing.com/tutorial

Software package for neuron reconstruction and visualization. Version 1.0z has been patched on Jun. 9, 2016. Complete tracing of a neuron. There is no need to install neuTube. All you need to do is to decompress the downloaded zip file. To uninstall, just simply delete the files. The data example is from the DIADEM Challenge. Complete tracing of a neuron. Proudly powered by WordPress.

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neuTube | Software package for neuron reconstruction and visualization

Software package for neuron reconstruction and visualization. Free Software for Neuron Tracing. NeuTube is open source software for reconstructing neurons from fluorescence microscope images. The main function of neuTube is to generate a neuron structure from a 3D image with user interaction, which mainly consists of mouse clicks. It can also load SWC files from any other source for visualization or further editing. Proudly powered by WordPress.

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