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NGS: News on Genomic Studies

A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share.

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NGS: News on Genomic Studies | ngs-brescia.blogspot.com Reviews
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A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share.
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NGS: News on Genomic Studies | ngs-brescia.blogspot.com Reviews

https://ngs-brescia.blogspot.com

A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share.

INTERNAL PAGES

ngs-brescia.blogspot.com ngs-brescia.blogspot.com
1

NGS: News on Genomic Studies: One banana a day will keep the doctor away

http://ngs-brescia.blogspot.com/2014/06/one-banana-day-will-keep-doctor-away.html

NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Monday, 23 June 2014. One banana a day will keep the doctor away. Subscribe to: Post Comments (Atom). NGS and Personal Genomics sites and blogs. CDC - Public Health Genomics. Genomeweb - The Daily Scan.

2

NGS: News on Genomic Studies: National Children's Study stopped, waiting for revisions

http://ngs-brescia.blogspot.com/2014/06/national-childrens-study-stopped.html

NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Wednesday, 25 June 2014. National Children's Study stopped, waiting for revisions. NCS) sustained by NIH and the US government. However the NIH director, Francis Collins, has recently announced. National Aca...

3

NGS: News on Genomic Studies: March 2014

http://ngs-brescia.blogspot.com/2014_03_01_archive.html

NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Tuesday, 25 March 2014. Flash Report: Loblolly pine genome is largest ever sequenced. Below is the report from CBSNews.com. Conifers have been around since the age of the dinosaurs. To simplify this huge gen...

4

NGS: News on Genomic Studies: April 2014

http://ngs-brescia.blogspot.com/2014_04_01_archive.html

NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Wednesday, 30 April 2014. Pubmed highlight: Comparison of mapping alghoritms. Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data. Wednesday, 23 April 2014.

5

NGS: News on Genomic Studies: July 2014

http://ngs-brescia.blogspot.com/2014_07_01_archive.html

NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Monday, 14 July 2014. New challenges in NGS. However, beside the milestones achieved, we have now to deal with new challenges that were largely underestimated in the early days of NGS. GWAS studies have show...

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biolektures.wordpress.com biolektures.wordpress.com

Ion Torrent – Rapid Software Improvements | BioLektures

https://biolektures.wordpress.com/2011/09/19/ion-torrent-rapid-software-improvements

This blog contains mainly bioinformatics analysis and discussion. The Ion Torrent Accuracy Challenge – A non-biological explanation. Ion Torrent and the Democratization of Sequencing →. Ion Torrent – Rapid Software Improvements. September 19, 2011. There are three major areas that software can improve. Throughput – Identify more Ion Sphere Particles (ISPs) with library fragments therefore increasing the total number of reads. Quality – More and longer reads aligning back to the reference sequence. The ta...

biolektures.wordpress.com biolektures.wordpress.com

Life Grand Challenges – Innocentive but not enough Incentives (Part 3) | BioLektures

https://biolektures.wordpress.com/2011/08/18/life-grand-challenges-–-innocentive-but-not-enough-incentives-part-3

This blog contains mainly bioinformatics analysis and discussion. Life Grand Challenges Mission Impossible to Improbable (Part 2). Challenges in Improving Ion Torrent Raw Accuracy (Part 3) →. Life Grand Challenges Innocentive but not enough Incentives (Part 3). August 18, 2011. Ever used IMDB or Rotten Tomatoes as an indicator of how good a movie is and whether you should watch it? While Tekken best movie ever only got 5.0 on IMDB. Competition was open in 2006 and would end in 2011. A progress prize of 5...

biolektures.wordpress.com biolektures.wordpress.com

Disclaimer | BioLektures

https://biolektures.wordpress.com/disclaimer

This blog contains mainly bioinformatics analysis and discussion. My thoughts, opinions and random outburst are independent and do not reflect the views of the University of Sydney or the Institute for Neuroscience and Muscle Research. In fact, most people in my lab thinks I’m nuts and my jokes are terrible. I have received free dinner! Unfortunately, the Illumina free dinner at ASHG 2011 was invite only😦. Here are the parties I have received food from and my ratings out of 10. Other Mum’s (10/10)...

biolektures.wordpress.com biolektures.wordpress.com

Are MiSeq miscalls influenced by preceding homopolymers? | BioLektures

https://biolektures.wordpress.com/2012/02/01/are-miseq-miscalls-influenced-by-preceding-homopolymers

This blog contains mainly bioinformatics analysis and discussion. Annotate: A Plugin for the Ion Torrent Browser. Crowd Sourcing 2.0 – Smaller and Faster = Better →. Are MiSeq miscalls influenced by preceding homopolymers? February 1, 2012. A recent post in the Ion Community Torrent Dev section presents an analysis showing MiSeq systematic substitution errors which appear to be caused by preceding homopolymers (HPs). The Omics Omics blog post. 2) E coli MG1655. From a recent Genome Biology publication.

biolektures.wordpress.com biolektures.wordpress.com

Fundamentals of base calling (Part 1) | BioLektures

https://biolektures.wordpress.com/2011/08/10/fundamentals-of-base-calling-part-1

This blog contains mainly bioinformatics analysis and discussion. Fundamentals of base calling (Prequel). Fundamentals of base calling (Part 2) →. Fundamentals of base calling (Part 1). August 10, 2011. The Ionogram of a well containing. These are raw values extracted from the 1.wells file. Note: The flow order does not follow a repeating 4 flow cycle of T. Packages to produce the plots. The Ionogram of the same well containing. Below are the bases called for this well. This was the 5th best. As this bet...

crazyhottommy.blogspot.com crazyhottommy.blogspot.com

Diving into Genetics and Genomics: November 2016

http://crazyhottommy.blogspot.com/2016_11_01_archive.html

Diving into Genetics and Genomics. A wet biologist's bioinformatic notes. Mostly is about Linux, R, python, reproducible research, open science and NGS. I am into data science! I am working on cancer genomics and epigenomics at MD Anderson cancer center. Disclaimer: For posts that I copied from other places, credits go to the original authors. Follow the links to the original posts, I mainly put them here for my own future references. Friday, November 25, 2016. Compare boxplot, violin plot and sina plot.

crazyhottommy.blogspot.com crazyhottommy.blogspot.com

Diving into Genetics and Genomics: reorder boxplot according to median

http://crazyhottommy.blogspot.com/2017/01/reorder-boxplot-according-to-median_3.html

Diving into Genetics and Genomics. A wet biologist's bioinformatic notes. Mostly is about Linux, R, python, reproducible research, open science and NGS. I am into data science! I am working on cancer genomics and epigenomics at MD Anderson cancer center. Disclaimer: For posts that I copied from other places, credits go to the original authors. Follow the links to the original posts, I mainly put them here for my own future references. Tuesday, January 3, 2017. Reorder boxplot according to median. Why I a...

crazyhottommy.blogspot.com crazyhottommy.blogspot.com

Diving into Genetics and Genomics: June 2016

http://crazyhottommy.blogspot.com/2016_06_01_archive.html

Diving into Genetics and Genomics. A wet biologist's bioinformatic notes. Mostly is about Linux, R, python, reproducible research, open science and NGS. I am into data science! I am working on cancer genomics and epigenomics at MD Anderson cancer center. Disclaimer: For posts that I copied from other places, credits go to the original authors. Follow the links to the original posts, I mainly put them here for my own future references. Thursday, June 30, 2016. How to deal with paired samples for snakemake.

crazyhottommy.blogspot.com crazyhottommy.blogspot.com

Diving into Genetics and Genomics: December 2016

http://crazyhottommy.blogspot.com/2016_12_01_archive.html

Diving into Genetics and Genomics. A wet biologist's bioinformatic notes. Mostly is about Linux, R, python, reproducible research, open science and NGS. I am into data science! I am working on cancer genomics and epigenomics at MD Anderson cancer center. Disclaimer: For posts that I copied from other places, credits go to the original authors. Follow the links to the original posts, I mainly put them here for my own future references. Tuesday, December 27, 2016. The End of 2016. I am so grateful for this...

crazyhottommy.blogspot.com crazyhottommy.blogspot.com

Diving into Genetics and Genomics: September 2016

http://crazyhottommy.blogspot.com/2016_09_01_archive.html

Diving into Genetics and Genomics. A wet biologist's bioinformatic notes. Mostly is about Linux, R, python, reproducible research, open science and NGS. I am into data science! I am working on cancer genomics and epigenomics at MD Anderson cancer center. Disclaimer: For posts that I copied from other places, credits go to the original authors. Follow the links to the original posts, I mainly put them here for my own future references. Thursday, September 22, 2016. Let’s use a microarray data for de...

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NGS: News on Genomic Studies

NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Tuesday, 27 June 2017. The data are out there! How Repositive can help you find and access human genomic data. The power of data sharing and how I met Repositive at ESHG 2017. Luckily for us, and for researc...

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7th Annual Next Generation Sequencing Congress, London, 12-13 November 2015

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