ngsutils.org ngsutils.org

ngsutils.org

NGSUtils - Tools for next-generation sequencing analysis

Tools for next-generation sequencing analysis. A more recent version of these tools is available as a Java port: ngsutilsj. This newer java version is more up-to-date, is significantly faster, and easier to install. For more information, or to download a copy, see: http:/ compgen.io/ngsutilsj. These tools have of great use within our lab group, and so we are happy to make them available to the greater community. FASTQ files, base- and color-space). Getting started ». Added a barcode split. Completed the ...

http://www.ngsutils.org/

WEBSITE DETAILS
SEO
PAGES
SIMILAR SITES

TRAFFIC RANK FOR NGSUTILS.ORG

TODAY'S RATING

>1,000,000

TRAFFIC RANK - AVERAGE PER MONTH

BEST MONTH

December

AVERAGE PER DAY Of THE WEEK

HIGHEST TRAFFIC ON

Friday

TRAFFIC BY CITY

CUSTOMER REVIEWS

Average Rating: 4.0 out of 5 with 10 reviews
5 star
5
4 star
2
3 star
2
2 star
0
1 star
1

Hey there! Start your review of ngsutils.org

AVERAGE USER RATING

Write a Review

WEBSITE PREVIEW

Desktop Preview Tablet Preview Mobile Preview

LOAD TIME

0.2 seconds

FAVICON PREVIEW

  • ngsutils.org

    16x16

  • ngsutils.org

    32x32

  • ngsutils.org

    64x64

  • ngsutils.org

    128x128

  • ngsutils.org

    160x160

  • ngsutils.org

    192x192

CONTACTS AT NGSUTILS.ORG

Marcus Breese

334 E ●●●●●●d Blvd

Redw●●●●City , CA, 94061

US

1.31●●●●0851
1.55●●●●5555
ma●●●●@breese.com

View this contact

Marcus Breese

334 E ●●●●●●d Blvd

Redw●●●●City , CA, 94061

US

1.31●●●●0851
1.55●●●●5555
ma●●●●@breese.com

View this contact

Marcus Breese

334 E ●●●●●●d Blvd

Redw●●●●City , CA, 94061

US

1.31●●●●0851
1.55●●●●5555
ma●●●●@breese.com

View this contact

Login

TO VIEW CONTACTS

Remove Contacts

FOR PRIVACY ISSUES

DOMAIN REGISTRATION INFORMATION

REGISTERED
n/a
UPDATED
2014 July 02
EXPIRATION
EXPIRED REGISTER THIS DOMAIN

BUY YOUR DOMAIN

Network Solutions®

NAME SERVERS

1
dns1.registrar-servers.com
2
dns2.registrar-servers.com
3
dns3.registrar-servers.com
4
dns4.registrar-servers.com
5
dns5.registrar-servers.com

REGISTRAR

eNom, Inc. (R39-LROR)

eNom, Inc. (R39-LROR)

WHOIS : whois.publicinterestregistry.net

REFERRED :

CONTENT

SCORE

6.2

PAGE TITLE
NGSUtils - Tools for next-generation sequencing analysis | ngsutils.org Reviews
<META>
DESCRIPTION
Tools for next-generation sequencing analysis. A more recent version of these tools is available as a Java port: ngsutilsj. This newer java version is more up-to-date, is significantly faster, and easier to install. For more information, or to download a copy, see: http:/ compgen.io/ngsutilsj. These tools have of great use within our lab group, and so we are happy to make them available to the greater community. FASTQ files, base- and color-space). Getting started ». Added a barcode split. Completed the ...
<META>
KEYWORDS
1 ngsutils
2 introduction
3 getting started
4 installation
5 news
6 citation
7 modules
8 bamutils
9 bedutils
10 fastqutils
CONTENT
Page content here
KEYWORDS ON
PAGE
ngsutils,introduction,getting started,installation,news,citation,modules,bamutils,bedutils,fastqutils,gtfutils,related,xsqutils,tabutils,project links,latest version,wiki,git repository,bug reports,license bsd,update,bam/sam files,bed files,installation »
SERVER
GitHub.com
CONTENT-TYPE
utf-8
GOOGLE PREVIEW

NGSUtils - Tools for next-generation sequencing analysis | ngsutils.org Reviews

https://ngsutils.org

Tools for next-generation sequencing analysis. A more recent version of these tools is available as a Java port: ngsutilsj. This newer java version is more up-to-date, is significantly faster, and easier to install. For more information, or to download a copy, see: http:/ compgen.io/ngsutilsj. These tools have of great use within our lab group, and so we are happy to make them available to the greater community. FASTQ files, base- and color-space). Getting started ». Added a barcode split. Completed the ...

INTERNAL PAGES

ngsutils.org ngsutils.org
1

NGSUtils - Installation

http://ngsutils.org/installation

You can either download a specific version of NGSUtils or clone our Git repository. If you have. Installed on your computer, this is the recommended method for installation. Go to: https:/ github.com/ngsutils/ngsutils/tags. To download the latest version of NGSUtils. The easiest way to install (and get updates) is to checkout the code from GitHub directly. To do this, you’ll need to clone our repository. Git clone git:/ github.com/ngsutils/ngsutils.git $ cd ngsutils $ make. You should be able to run the.

2

NGSUtils - bedutils

http://ngsutils.org/modules/bedutils

Cleans a BED file (score should be integers). Extends BED regions (3'). Find the nearest annotation for a BED file (experimental). Find overlapping BED regions from a query and target file. Merges overlapping BED regions. Given a number of BED files, calculate the number of samples that overlap regions in a reference BED file. Extract the sizes of BED regions. Sorts a BED file (in place). Calculates simple stats for a BED file. Subtracts one set of BED regions from another. Cleans up a bedgraph file.

3

NGSUtils - bamutils

http://ngsutils.org/modules/bamutils

Find potential minor allele frequency (experimental). Finds regions of unusual deletions (CLIP-seq) (experimental). Calculates counts/FPKM for genes/BED regions/repeats (also CNV). Filter out multiple mappings for a read, selecting only the best. Converts region mapping to genomic mapping. Export reads, mapped positions, and other tags. Finds regions expressed in a BAM file. Extracts reads based on regions in a BED file. Removes reads from a BAM file based on criteria. Convert BAM reads to BED regions.

4

NGSUtils - gtfutils

http://ngsutils.org/modules/gtfutils

Appends isoform annotation from UCSC isoforms file. Appends isoform/name annotation from RefSeq/refLink. Appends name annotation from UCSC Xref file. Annotates genomic positions based on a GTF model. Filter annotations from a GTF file. Extract genomic/transcript sizes for genes. Build a junction library from FASTA and GTF model. Query a GTF file by coordinates. Removes " dup" entries from a GTF file (experimental). Converts a GFF annotation file to GTF (experimental). Convert a GFF/GTF file to BED format.

5

NGSUtils - Citation

http://ngsutils.org/citation

If you use NGSUtils in your research, please cite the following paper:. Marcus R. Breese and Yunlong Liu. NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets. Bioinformatics (2013) 29(4): 494-496. 2010-2012 - The Trustees of Indiana University. Last generated on 2014-09-23 23:46:42 0000.

UPGRADE TO PREMIUM TO VIEW 3 MORE

TOTAL PAGES IN THIS WEBSITE

8

OTHER SITES

ngsurgical.com ngsurgical.com

Surgery Blairsville Georgia Surgical Associates of North Georgia

207 Hospital Circle, Suite B. Steven N. Efird, MD, FACS. Blairsville, Georgia 30512. Willis E. Moody, MD, FACS. Surgical Associates of North Georgia, Blairsville Georgia. Located on the campus of Union General Hospital, we are board certified surgeons specializing in the surgical management of diseases affecting the breast, gallbladder, small and large intestine, thyroid and skin. We also specialize in laparoscopy and repair of hernias of the abdominal wall and diaphragm.

ngsurvey.co.uk ngsurvey.co.uk

Urban Edge Design

ngsurveygroup.com ngsurveygroup.com

:: NEW GENERATION ::

Ours are able to work with several kinds of products:. Systems and services certification. Receive in your email, informations and news from NEW GENERATION. Completely independent, that has established. Itself as a leading supplier of agricultural testing. Inspection services. We are fully committed. To quality control and assurance and ensure that. We employ only the highest calibre staff to. Ensure we can effectively fulfil our client’s. Our company have partnership with different laboratory in Brazil.

ngsushan.livejournal.com ngsushan.livejournal.com

Su Shan's

Powered by LiveJournal.com.

ngsusin.blogspot.com ngsusin.blogspot.com

2nd place of diary=]

2nd place of diary=]. If there's no tomorrow. Sunday, October 16, 2011. To you : LEF. I'm so attached to you. Imy. Yes I do until I dunno how to put into words. Hate myself being like this for so many bloody days! I just can't recover :( I'm not strong yet not tough . Please be by my side:( watching u from the back is the worst feeling I've ever had. ;'(. Please tell me you miss me to. Monday, July 4, 2011. Sorry that I love u. I'm in deep shit . I know this shouldn't come at this time . I think I like u .

ngsutils.org ngsutils.org

NGSUtils - Tools for next-generation sequencing analysis

Tools for next-generation sequencing analysis. A more recent version of these tools is available as a Java port: ngsutilsj. This newer java version is more up-to-date, is significantly faster, and easier to install. For more information, or to download a copy, see: http:/ compgen.io/ngsutilsj. These tools have of great use within our lab group, and so we are happy to make them available to the greater community. FASTQ files, base- and color-space). Getting started ». Added a barcode split. Completed the ...

ngsuyasa.wordpress.com ngsuyasa.wordpress.com

Mande Blog | life is beautiful, a wonderful world and wish all beings happy. i hope this day full of blessings and mercy of God for you and i. peace.

Life is beautiful, a wonderful world and wish all beings happy. i hope this day full of blessings and mercy of God for you and i. peace. Code of professional conduct. FPSO Projects in Indonesia. The use of floating production, storage and offloading (FPSO) and shuttle tankers continue to increase as oil and gas producers are increasingly penetrated into deeper waters. Floating production, storage and […]. Read Article →. An Introduction to Mechanical Testing for WPS / PQR Qualification. December 7, 2016.

ngsuyin.blogspot.com ngsuyin.blogspot.com

*My Memories*

Monday, April 28, 2008. Went to Station One for dinner around 9 . reached home around 11 . was soooo tired. and guess what - no water supply again. ARGH! After the movie, walked around for a while. then went home around 4 . took a nap when reached home. woke up around dinner time and had Bak Kut Teh for dinner. hahaha. din eat much rice and meat. drank alot of the soup. and its night time, getting ready for work tomoro. *what a coming week*. Monday, April 21, 2008. Friday, April 18, 2008. A new life in a...

ngsuzhen.wordpress.com ngsuzhen.wordpress.com

Things I love at the moment

Things I love at the moment. Let the mud slinging begin…. Lee Min Ho’s feature film debut. Gets him down and dirty, which I think suits him quite perfectly since he can unleash a raw, edgy energy when need be. The new poster released catches he and Kim Rae Won in action and underlines the gritty of the movie just in case we forget looking at how beautiful Lee Min Ho is even with mud smeared all over him. Visually, my man is larger-than-life gorgeous and I’m confident that. December 28, 2014. My apologies...

ngsuzuki.com ngsuzuki.com

脳外科内科すずきクリニック

4月28日 土 5月6日 日. 5月1日 火 、2日 水.

ngsv.clciks.com ngsv.clciks.com

無効なURLです