nifti.nimh.nih.gov

bmu.psychiatry.cam.ac.uk

CamBA

http://www.bmu.psychiatry.cam.ac.uk/software

Part of the Department of Psychiatry, University of Cambridge, UK. Email and phone search. You are here: Brain Mapping Unit. Researchers in neuroscience are increasingly exploiting the possibility of combining program modules from different software packages into processing pipelines to create analysis solutions which are not possible with a single software package alone. CamBA. CamBA seperates code services into three domains: Pipeline processes. Virtual Pipeline Laboratory: CamBAfx. Software for proces...

support.brainvoyager.com

NIfTI conversion (volumetric files)

http://support.brainvoyager.com/available-tools/49-available-plugins/166-nifti-conversion-volumetric-files.html

Skip to main navigation. Skip to first column. Skip to second column. NIfTI conversion (volumetric files). Conversion between BrainVoyager and NIfTI file formats. NIfTI is a file format to save volumetric (f)MRI data and is the successor of Analyze 7.5. A NIfTI file consists of header and image data, saved in one *.nii file or a *.hdr and an *.img file (for more information, see http:/ nifti.nimh.nih.gov/. And http:/ www.nitrc.org/projects/nifti. Please see the GIFTI plugin. Please note that the plugin i...

ifit.mccode.org

iFit: Importing data (iData/load)

http://ifit.mccode.org/Load.html

IFit: importing data into objects. Importing data from a file (iData, load). Distant files (http:/ , .). Compressed files (.zip, .). Setting Signal and Axes when they are not set properly. Importing directly from Matlab variables. Importing from Matlab Figures. How it works (looktxt, iLoad, Loaders). Commands we use in this page: iData, load,. In this document we present how to import data as iData. Importing data from a file ( iData. This is done by converting a file path to an iData. Warning: File 'iFi...

cancerimagingarchive.net

Download Supporting Data - The Cancer Imaging Archive (TCIA)

http://www.cancerimagingarchive.net/download-supporting-data

About The Cancer Imaging Archive (TCIA). About the Cancer Imaging Program (CIP). About the University of Arkansas for Medical Sciences (UAMS). Data usage policies and restrictions. Publications Based on TCIA. Analysis results, clinical trial data and other non-image information are also managed by TCIA. A full list of the supporting data that compliment the available images can be found on the Collections. Supporting data on the wiki. Supporting data downloaded with the image data. Supporting data is som...

tbichallenge.wordpress.com

Data | mTOP

https://tbichallenge.wordpress.com/data

Mild Traumatic Brain Injury Outcome Prediction. Deadline has passed. No further submissions will be considered. The data set is available both in raw and pre-processed format. The raw data set (prefix: VSD.Head*) consists of defaced T1-weighted images (T1w), diffusion-weighted images (DWI) and corresponding files with information for b-vectors (bvecs) and b-values (bvals). All MRI data are provided in Neuroimaging Informatics Technology Initiative. NIfTI) format (size 1.8GB). T1w of 23 year old male: VSD...

michallenges.org

Resources for conducting challenges

http://michallenges.org/resources.html

DCE MRI challenge (in progress). PET segmentation challenge (planning stages). CT segmentation challenge (completed). Other medical imaging challenges (present and past). Resources for conducting challenges. Phantom data: A variety of resources exist for phantom data that can be utilized in the running of image analysis challenges. Since ground truth is often known in this case, both bias and repeatability can be estimated. Some examples include the. Anthropomorphic thoracic phantom (FDA phantom). Last u...

medfloss.org

Standards | Medical Free/Libre and Open Source Software

http://www.medfloss.org/node/616

Skip to main content. Medical Free/Libre and Open Source Software. Structured project database, service providers, publications, events, . You are welcome to Login. To be able to add, update or extend any content and thereby helping to keep the given information valid, appropriate and up-to-date. 3] - Continuity of Care Document. 9] - Continuity of Care Record ( more information. 4] - Clinical Document Architecture ( more information. CTS2 - Common Terminoloty Services. 4 months 2 weeks. On Free D Path.

mvpa.blogspot.com

MVPA Meanderings: April 2015

http://mvpa.blogspot.com/2015_04_01_archive.html

Musings on fMRI multivariate pattern analyses. Wednesday, April 22, 2015. ROI-based MVPA: surface and volume comparisons, using HCP data. How should we do a "standard" ROI-based MVPA: on the surface or in the volume? There are a few mass-univariate (e.g., cited in the introduction of Glasser et al., 2013. And searchlight-based (most from Nikolaas. Comparisons in the literature, but not many, and not for larger ROIs (send some pointers if I just missed 'em). I used ten-fold cross-validation in each group ...

artefact.tk

MATLAB Toolboxes

http://www.artefact.tk/software/matlab

M2HTML, JSONio, XMLTree, GIfTI, Provenance and mVTK. This toolbox is intended to provide automatic generation of MATLAB M-files and toolboxes documentation in HTML (like Doxygen for C ). XMLTree is an XML 1.0 parser written in MATLAB. It is embedded in a MATLAB class including powerful methods to import, export, access and modify the data. XPath language is used for addressing parts of the XML document. A MATLAB library to handle GIfTI Geometry file format. For visualisation in ParaView.