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Novocraft Blog | novocraft.wordpress.com Reviews

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What's new with the software, the people and the science...

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1

2012 July 02 « Novocraft Blog

https://novocraft.wordpress.com/2012/07/02

What’s new with the software, the people and the science…. Novoalign V2.08.02 and NovoalignCS V1.02.02 and Novosort (V1.0) released. Release Novoalign V2.08.02 and NovoalignCS V1.02.02, Novosort (V1.0). Please download from http:/ www.novocraft.com. Below are the new release details. Removed input file buffering when reading from pipes. This allows Novoalign to be used as a service. Fix: if option –hdrhd off was used on NovoalignMPI the reads were processed as single end rather than paired end. Fix: When...

2

Novoalign Version 3 released « Novocraft Blog

https://novocraft.wordpress.com/2013/05/08/novoalign-version-3-released

What’s new with the software, the people and the science…. Novoalign Version 3 released. Novoalign version 3 is a major release of the most accurate NGS read aligner. Improvements have been made for longer reads and more accurate indel detection. Go to http:/ www.novocraft.com. And download it now to get started. May 8, 2013. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). Notify me of new comments via email.

3

2012 August 08 « Novocraft Blog

https://novocraft.wordpress.com/2012/08/08

What’s new with the software, the people and the science…. Novoalign consistently outperforms other aligners. A new review shows Novoalign being the aligner of choice for more accurate variant detection. Get the full article at http:/ www.edgebio.com/exome-data-analysis-pipeline. August 8, 2012. We are a small team of software developers and scientists dedicated to bringing you the freshest and best bioinformatics software. Blog at WordPress.com. Follow “Novocraft Blog”.

4

2011 February 14 « Novocraft Blog

https://novocraft.wordpress.com/2011/02/14

What’s new with the software, the people and the science…. Novoalign 2.07.07 and NovoalignCS V1.01.07 Released. We have released new versions of Novoalign and NovoalignCS. Please visit our downloads. Page to get these latest offerings. Fixed problem where if read was hard clipped and soft clipped the soft clipping was reported first. Hard clipping should always be first. Sensitivity/Specificity neutral performance improvements in paired end mode. February 14, 2011. Blog at WordPress.com. Build a website ...

5

2010 December 16 « Novocraft Blog

https://novocraft.wordpress.com/2010/12/16

What’s new with the software, the people and the science…. Novoalign V2.07.05 and NovoalignCS V1.01.05 released. We are pleased to announce a new release of Novoalign and NovoalignCS. Please visit our Downloads section at http:/ www.novocraft.com. To get these new releases. In this release we have addressed some Picard validation problems to do with mate alignment locations and insert size. Correct problem where insert size was 1bp for non proper pairs that aligned on the same chromosome. In miRNA mode a...

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biolektures.wordpress.com biolektures.wordpress.com

Annotate: A Plugin for the Ion Torrent Browser | BioLektures

https://biolektures.wordpress.com/2011/12/29/annotate-a-plugin-for-the-ion-torrent-browser

This blog contains mainly bioinformatics analysis and discussion. Signal Processing – Room for improvements? Are MiSeq miscalls influenced by preceding homopolymers? Annotate: A Plugin for the Ion Torrent Browser. December 29, 2011. Novel versus Common Variants. Stored on the Torrent Server is ordered different to the dbSNP VCF file. From the GATK 1.2 resouce bundle. For this plugin, I have decided to index the VCF file using tabix. And call the variants outside the GATK framework. Functional Impact of N...

biolektures.wordpress.com biolektures.wordpress.com

Ion Torrent – Rapid Software Improvements | BioLektures

https://biolektures.wordpress.com/2011/09/19/ion-torrent-rapid-software-improvements

This blog contains mainly bioinformatics analysis and discussion. The Ion Torrent Accuracy Challenge – A non-biological explanation. Ion Torrent and the Democratization of Sequencing →. Ion Torrent – Rapid Software Improvements. September 19, 2011. There are three major areas that software can improve. Throughput – Identify more Ion Sphere Particles (ISPs) with library fragments therefore increasing the total number of reads. Quality – More and longer reads aligning back to the reference sequence. The ta...

biolektures.wordpress.com biolektures.wordpress.com

Life Grand Challenges – Innocentive but not enough Incentives (Part 3) | BioLektures

https://biolektures.wordpress.com/2011/08/18/life-grand-challenges-–-innocentive-but-not-enough-incentives-part-3

This blog contains mainly bioinformatics analysis and discussion. Life Grand Challenges Mission Impossible to Improbable (Part 2). Challenges in Improving Ion Torrent Raw Accuracy (Part 3) →. Life Grand Challenges Innocentive but not enough Incentives (Part 3). August 18, 2011. Ever used IMDB or Rotten Tomatoes as an indicator of how good a movie is and whether you should watch it? While Tekken best movie ever only got 5.0 on IMDB. Competition was open in 2006 and would end in 2011. A progress prize of 5...

biolektures.wordpress.com biolektures.wordpress.com

Disclaimer | BioLektures

https://biolektures.wordpress.com/disclaimer

This blog contains mainly bioinformatics analysis and discussion. My thoughts, opinions and random outburst are independent and do not reflect the views of the University of Sydney or the Institute for Neuroscience and Muscle Research. In fact, most people in my lab thinks I’m nuts and my jokes are terrible. I have received free dinner! Unfortunately, the Illumina free dinner at ASHG 2011 was invite only😦. Here are the parties I have received food from and my ratings out of 10. Other Mum’s (10/10)...

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Are MiSeq miscalls influenced by preceding homopolymers? | BioLektures

https://biolektures.wordpress.com/2012/02/01/are-miseq-miscalls-influenced-by-preceding-homopolymers

This blog contains mainly bioinformatics analysis and discussion. Annotate: A Plugin for the Ion Torrent Browser. Crowd Sourcing 2.0 – Smaller and Faster = Better →. Are MiSeq miscalls influenced by preceding homopolymers? February 1, 2012. A recent post in the Ion Community Torrent Dev section presents an analysis showing MiSeq systematic substitution errors which appear to be caused by preceding homopolymers (HPs). The Omics Omics blog post. 2) E coli MG1655. From a recent Genome Biology publication.

biolektures.wordpress.com biolektures.wordpress.com

Fundamentals of base calling (Part 1) | BioLektures

https://biolektures.wordpress.com/2011/08/10/fundamentals-of-base-calling-part-1

This blog contains mainly bioinformatics analysis and discussion. Fundamentals of base calling (Prequel). Fundamentals of base calling (Part 2) →. Fundamentals of base calling (Part 1). August 10, 2011. The Ionogram of a well containing. These are raw values extracted from the 1.wells file. Note: The flow order does not follow a repeating 4 flow cycle of T. Packages to produce the plots. The Ionogram of the same well containing. Below are the bases called for this well. This was the 5th best. As this bet...

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Crowd Sourcing 2.0 – Smaller and Faster = Better | BioLektures

https://biolektures.wordpress.com/2012/04/21/crowd-sourcing-2-0-smaller-and-faster-better

This blog contains mainly bioinformatics analysis and discussion. Are MiSeq miscalls influenced by preceding homopolymers? Time stamping Steve Avery’s Blood DNA →. Crowd Sourcing 2.0 – Smaller and Faster = Better. April 21, 2012. Yes, scientific writing is the art of suggesting everything but committing to nothing😆. Thanks to everyone who visited and supported Biolektures during the non-active periods. In August, I blogged a three part series that criticized the challenge in terms of fairness. The above...

biolektures.wordpress.com biolektures.wordpress.com

Life Grand Challenges – Mission Impossible to Improbable (Part 2) | BioLektures

https://biolektures.wordpress.com/2011/08/16/life-grand-challenges-–-mission-impossible-to-improbable-part-2

This blog contains mainly bioinformatics analysis and discussion. Life Grand Challenges – Mission Impossible? Life Grand Challenges Innocentive but not enough Incentives (Part 3) →. Life Grand Challenges Mission Impossible to Improbable (Part 2). August 16, 2011. Part 3), I will write about what Life Technologies has done right with the Grand Challenge. One million dollar prize money. As a reference. I guess the girls working on the challenge would probably want the one million😛. Second, a forum space o...

biolektures.wordpress.com biolektures.wordpress.com

Ion Torrent and the Democratization of Sequencing | BioLektures

https://biolektures.wordpress.com/2011/10/26/ion-torrent-and-the-democratization-of-sequencing

This blog contains mainly bioinformatics analysis and discussion. Ion Torrent – Rapid Software Improvements. Ion Torrent Sequencing on Humans →. Ion Torrent and the Democratization of Sequencing. October 26, 2011. Shows the positions of where all the next generation sequencers are in the world. This requires the facility to self report so is not entirely accurate but is close because people like to brag. There are two things you may notice on this map:. Within each country it tends to be the richer Insti...

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Ion Torrent Sequencing on Humans | BioLektures

https://biolektures.wordpress.com/2011/12/10/ion-torrent-sequencing-on-humans

This blog contains mainly bioinformatics analysis and discussion. Ion Torrent and the Democratization of Sequencing. Signal Processing – Room for improvements? Ion Torrent Sequencing on Humans. December 10, 2011. Bored to death seeing public releases of sequencing runs from. Coming off desktop sequencers? Today, Life Technologies released through the Ion Community a sequencing run that wasn’t from. Thank goodness. Ion Torrent released a human shotgun sequencing run from NS12911. 29 (including 3 INDELS).

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Novocraft

Http:/ www.novocraft.com/wp-content/themes/smartbox-installable/. Http:/ www.novocraft.com/. Pipeline and Software Development Services. Bioinformatics Contract Research Services. Pipeline and Software Development Services. Bioinformatics Contract Research Services. We are an avid group of Bioinformaticians, software developers and statisticians working with the full range of next-generation sequencing platforms. read more. Request for trial today! NovoWorx Version 1.0a Released. October 10, 2016. The fi...

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Novocraft Blog

What’s new with the software, the people and the science…. Novoalign Version 3 released. Novoalign version 3 is a major release of the most accurate NGS read aligner. Improvements have been made for longer reads and more accurate indel detection. Go to http:/ www.novocraft.com. And download it now to get started. May 8, 2013. Novoalign consistently outperforms other aligners. August 8, 2012. Novoalign V2.08.02 and NovoalignCS V1.02.02 and Novosort (V1.0) released. Below are the new release details. Fix: ...

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Novo Cream Separators for Small Farms

View or sign our guestbook! This innovative cream separator is ideal for people with goats, cows, or sheep on a small farm. The adjustable-speed motor improves the separation process, and all parts of this separator are dishwasher safe. The continuous-duty rated Novo cream separator will separate 80 liters of milk and cream per hour, and is easy to assemble and use. Whole milk, cream, butter and buttermilk are best when they are fresh, and this new separator will add value to your small farm.