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NOXCLASS.BIOINF.MPI-SB.MPG.DE

NOXclass - An SVM Classifier Identifying Protein-Protein Interaction Types

An SVM Classifier Identifying Protein-Protein Interaction Types. Is a classifier identifying protein-protein interaction types (biological obligate, biological non-obligate and crystal packing) implemented using a support vector machine (SVM) algorithm. more. Features to be used in SVM:. 2 Interface area ratio:. 3 Area-based amino acid composition:. 4 Correlation between interface and protein surface:. 5 Gap volume index:. 6 Conservation score (. Or upload your own structure files (in PDB format):.

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NOXclass - An SVM Classifier Identifying Protein-Protein Interaction Types | noxclass.bioinf.mpi-sb.mpg.de Reviews
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An SVM Classifier Identifying Protein-Protein Interaction Types. Is a classifier identifying protein-protein interaction types (biological obligate, biological non-obligate and crystal packing) implemented using a support vector machine (SVM) algorithm. more. Features to be used in SVM:. 2 Interface area ratio:. 3 Area-based amino acid composition:. 4 Correlation between interface and protein surface:. 5 Gap volume index:. 6 Conservation score (. Or upload your own structure files (in PDB format):.
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NOXclass - An SVM Classifier Identifying Protein-Protein Interaction Types | noxclass.bioinf.mpi-sb.mpg.de Reviews

https://noxclass.bioinf.mpi-sb.mpg.de

An SVM Classifier Identifying Protein-Protein Interaction Types. Is a classifier identifying protein-protein interaction types (biological obligate, biological non-obligate and crystal packing) implemented using a support vector machine (SVM) algorithm. more. Features to be used in SVM:. 2 Interface area ratio:. 3 Area-based amino acid composition:. 4 Correlation between interface and protein surface:. 5 Gap volume index:. 6 Conservation score (. Or upload your own structure files (in PDB format):.

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noxclass.bioinf.mpi-sb.mpg.de noxclass.bioinf.mpi-sb.mpg.de
1

D3: Computational Biology & Applied Algorithmics: Software: NOXclass

http://noxclass.bioinf.mpi-sb.mpg.de/download.php

Please identify yourself by filling in the following form (asterisks mark mandatory fields). Note that you can download the software only after accepting the license terms. In case of any problems, please contact us. This is prototype software and may contain errors and bugs. You install and run it on your own risk. NOXclass is free of charge under the terms of GNU Lesser General Public License. For non-commercial use (i.e. by non-profit organizations on non-profit projects). This field must be filled.

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NOXclass - An SVM Classifier Identifying Protein-Protein Interaction Types

http://noxclass.bioinf.mpi-sb.mpg.de/help.php

Is a classifier identifying protein-protein interaction types (biological obligate, biological non-obligate and crystal packing) implemented using a support vector machine (SVM) algorithm [1]. Figure 1: Protein-protein Interaction (PDB: 1LFD chain A&B). To discriminate the three types of interactions, we utilize the following interface properties. Has been used to calculate the SASA for proteins. Area-based amino acid composition of protein-protein interface. The amino acid composition of the biological ...

3

NOXclass BNCP-CS

http://noxclass.bioinf.mpi-sb.mpg.de/trainingdata_bncpcs.htm

The BNCP-CS dataset contains 75 obligate interactions, 62 non-biological interactions, and 106 crystal packing contacts. Crystal packing contacts (106, structure files are available here. If you have any problem or suggestion, please contact Zhu, Hongbo.

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NOXclass - An SVM Classifier Identifying Protein-Protein Interaction Types

An SVM Classifier Identifying Protein-Protein Interaction Types. Is a classifier identifying protein-protein interaction types (biological obligate, biological non-obligate and crystal packing) implemented using a support vector machine (SVM) algorithm. more. Features to be used in SVM:. 2 Interface area ratio:. 3 Area-based amino acid composition:. 4 Correlation between interface and protein surface:. 5 Gap volume index:. 6 Conservation score (. Or upload your own structure files (in PDB format):.

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