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Nucleosome Explorer++Supplementary data and computational tools for predicting nucleosome formation energies, probabilities, and occupancies
http://nucleosome.rutgers.edu/
Supplementary data and computational tools for predicting nucleosome formation energies, probabilities, and occupancies
http://nucleosome.rutgers.edu/
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Nucleosome Explorer++ | nucleosome.rutgers.edu Reviews
https://nucleosome.rutgers.edu
Supplementary data and computational tools for predicting nucleosome formation energies, probabilities, and occupancies
nucleosome.rutgers.edu
Nucleosome Explorer
http://nucleosome.rutgers.edu/nucleosome
Welcome to the Nucleosome Explorer website. Morozov, A.V., Fortney, K., Gaykalova, D.A., Studitsky, V.M., Widom, J. and Siggia, E.D. (2008). Extrinsic and intrinsic nucleosome positioning signals. arXiv:0805.4017. Software for download (briefly described here. Updated Oct. 2007) and DynaPro. View of the S.cerevisiae. Nucleosome data (in the absence of other DNA-binding factors) is available here. Supporting data (explained here. Locations of experimentally known S.cerevisiae. Comments and Bug reports.
Supplementary Data for Zawadzki et al.
http://nucleosome.rutgers.edu/remodel
Chromatin-dependent transcription factor accessibility. Rather than nucleosome remodeling predominates. During global transcriptional restructuring in Saccharomyces cerevisiae,. Zawadzki, K.A., Morozov, A.V. and Broach, J.R. (2009). Mol Biol. Cell. HMM-predicted nucleosome probabilities and occupancies before glucose addition. HMM-predicted nucleosome probabilities and occupancies 20 mins after glucose addition. HMM-predicted nucleosome probabilities and occupancies 60 mins after glucose addition.
Nucleosome Energetics in C. Elegans
http://nucleosome.rutgers.edu/nucenergen/celegansnuc
Global remodeling of nucleosome positionsing in C. elegans. This website distributes data related to Global remodeling of nucleosome positionsing in C. elegans, Locke et al. Download mapped reads from the RsaI assay. And the HincII assay. All reads are mapped to the WS190 genome. These data are in .wig format. Unmapped reads may be obtained from the Sequence Read Archive under the accession number SRA050182. We also provide nucleosome occupancy for the RsaI and HincII in vitro. Assays as well as in vivo.
Supplementary Data for Tolkunov et al.
http://nucleosome.rutgers.edu/remodelener
Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites. To establish nucleosome-depleted regions at promoters. Tolkunov, D., Zawadzki, K., Singer, C., Elfving, N., Morozov, A.V., and Broach, J.R. (2011). Wild type grown in glycerol. Wild type grown in glycerol 20 mins after carbon upshift. Wild type grown in glucose. Wild type grown in glucose 20 mins after carbon downshift. Mutant grown in glycerol. Mutant grown in glucose. Mutant grown in glycerol 20 mins after carbon upshift.
Nucleosome Energetics
http://nucleosome.rutgers.edu/nucenergen
Nucleosome energetics predictions based on high throughput sequencing. This website distributes software and data related to "High-throughput sequencing reveals a simple model of nucleosome energetics", Locke et al. Download mapped reads from the MNase control assay in eland. Formats. (Information on WIG files is available here. Note that reads have been mapped to the SGD2 (Apr 2008 build) S. cerevisiae genome. And Escherichia coli K12 MG1655 (U00096) E. coli genome. And or WS170 C. elegans genome. At bp...
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Retrieved from " http:/ Nucleosome.org/index.php/Main Page. Related Links [ Edit. This page was last modified on 14 September 2009, at 03:24. This page has been accessed 9,523 times. Content is available under.
Nucleosome Explorer++
Welcome to Nucleosome Explorer! Supplementary data for our papers on chromatin structure prediction. Free software for predicting nucleosome formation energies, probabilities, and occupancies. An upload/download server for exchanging large (up to 4 GB) files. Enter File Exchange Server. People in the chromatin group. Alexandre V. Morozov. 2009-12), George Locke. 2008-), Rǎzvan V. Chereji. References and Supplementary Data. Previous version of the Nucleosome Explorer website (DNA mechanics model). Bai, L&...
nucleosome.stats.northwestern.edu
NuPoP: Nucleosome Positioning Prediction Engine
NuPoP: Nucleosome Positioning Prediction Engine. 4th order Markov Chain. 1st order Markov Chain. Paste your sequence in the box above, or upload a sequence file in FASTA format *. Please paste in or upload one, and only one, query sequence of length 148-50,000 bp to predict the nucleosome positioning. For longer sequences, please use the stand-alone Fortran program. Or NuPoP R package. Fortran program (see manual.pdf. For instructions of setup and usage). Mac OS X Leopard binary.
Nucleosome Structure & Function across Biological Scales and Time
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Nucleo Sommozzatori J.V.B. Technical Team
Nucleo Sommozzatori J.V.B. Technical Team. Immersioni subacquee tecniche e professionali, speleologia subacquea, spedizioni, corsi. Lavori subacquei d'alto fondale. Centro Formazione Istruttori Tecnici. Base operativa principale - Lago di Como. Posted by Nucleo Sommozzatori JVB - Technical Team at 21:29:00. Links to this post. Monte Generoso - Svizzera. Nucleo Esplorativo Speleologico e Speleosubacqueo TSA - Gruppo Speleo Deep World. Video e foto dello speleologo: Riccardo Brugnoli. Links to this post.
