o-miner.org

O-miner

Is a project designed to automate the analysis and annotation of complex -omics data. The software is easy to use and freely available to the scientific community. Users can upload data via a web page and can be notified by email when their analysis is completed. The output includes detailed data analysis reports and diagrams. Detailed information on the methods used can be found in the User Guide. Click here to see example input files. Pick data type . Extract suggestion for target matrix from GEO.

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O-miner | o-miner.org Reviews

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Is a project designed to automate the analysis and annotation of complex -omics data. The software is easy to use and freely available to the scientific community. Users can upload data via a web page and can be notified by email when their analysis is completed. The output includes detailed data analysis reports and diagrams. Detailed information on the methods used can be found in the User Guide. Click here to see example input files. Pick data type . Extract suggestion for target matrix from GEO.

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user guide,examples,citation,o miner,transcriptomics,genomics,methylation,project details,upload data,array technology,arrays,affymetrix expression array,affymetrix mirna array,affymetrix exon array,illumina expression array,rna seq post processing,paired

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O-miner | o-miner.org Reviews

https://o-miner.org

Is a project designed to automate the analysis and annotation of complex -omics data. The software is easy to use and freely available to the scientific community. Users can upload data via a web page and can be notified by email when their analysis is completed. The output includes detailed data analysis reports and diagrams. Detailed information on the methods used can be found in the User Guide. Click here to see example input files. Pick data type . Extract suggestion for target matrix from GEO.

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o-miner.org

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O-miner:Transcriptomics Analysis

http://www.o-miner.org/expression.html

Show me example input files. Please select data type. Affymetrix Human Genome U133 Plus 2.0 Array. Affymetrix Human Genome U133A Array. Affymetrix Human Genome U133B Array. Affymetrix Human Genome U133A 2.0 Array. Affymetrix Human Genome U95 Version 2 Array. Affymetrix Human Genome U95A Array. Affymetrix Human Genome U95B Array. Affymetrix Human Genome U95C Array. Affymetrix Human Genome U95D Array. Affymetrix Human Genome U95E Array. GEO Dataset (upto 2GB):. Compressed Folder/File (upto 2GB):.

2

O-miner-Genomics Analysis

http://www.o-miner.org/cnv.html

Show me example input files. Please select data type. Affymetrix 10K SNP Array (Xba142). Affymetrix 50K Xba SNP Array. Affymetrix 50K Hind SNP Array. Affymetrix 100K SNP Array. Affymetrix 250 Sty SNP Array. Affymetrix 250 Nsp SNP Array. Affymetrix 500K SNP Array. Affymetrix Genome Wide 5.0 SNP Array. Affymetrix Genome Wide 6.0 SNP Array. GEO Dataset (upto 2GB):. Compressed Folder/File (upto 2GB):. Not SNP5 or 6). Not SNP5 or 6). Genome Version (log2ratio data). OPTIONAL : Data Annotations.

3

O-miner Analysis Pipelines

http://www.o-miner.org/citation.html

O-miner is produced by the Cancer Bioinformatics Group at the Barts Cancer Institute. For more information please visit our website. If you use the O-miner in your work and/or publication(s), please cite:,. Cutts RJ, Dayem Ullah AZ, Sangaralingam A, Gadaleta E, Lemoine NR, Chelala C. O-miner: an integrative platform for automated analysis and mining of -omics data. Nucleic Acids Res. 2012 Jul;40 (Web Server issue). Queen Mary's School of Medicine and Dentistry.

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O-miner

http://www.o-miner.org/index.html

Is a project designed to automate the analysis and annotation of complex -omics data. The software is easy to use and freely available to the scientific community. Users can upload data via a web page and can be notified by email when their analysis is completed. The output includes detailed data analysis reports and diagrams. Detailed information on the methods used can be found in the User Guide. Click here to see example input files. Pick data type . Extract suggestion for target matrix from GEO.

5

O-miner Analysis Pipelines

http://www.o-miner.org/about.html

Is a project designed to automate analysis and annotation of complex -omics data. The software is easy to use and is freely available. 1] Bengtsson, H., Simpson, K., Bullard, J. and Hansen, K. (2008) aroma.affymetrix: A generic framework in R for analyzing small to very large Affymetrix data sets in bounded memory. Tech Report #745, Department of Statistics, University of California, Berkeley, February 2008.7. Please see our sample input files on our examples page. Aromaaffymetrix 2.1.0, sfit v0&...Raw C...

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Add ons | aroma-project.org

http://v1.aroma-project.org/addons

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. Interested in having your aroma-compatible package/method listed here? It's easy - just drop us a message on the mailing list. Addons to the Aroma Framework. Title: ACNE - Affymetrix SNP probe-summarization using non-negative matrix factorization. Authors: Maria Ortiz-Estevez, Angel Rubio, Henrik Bengtsson. Description: Package for NMF summarization of SNP probes. Chip types: All Affymetrix genotyping and CN arrays. Requirements: Cross platform, aroma&...

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