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OLIGOGENOME.STANFORD.EDU

Stanford OligoGenome - Welcome

Stanford Human OligoGenome comprises capture oligonucleotides which cover the the human genome

http://oligogenome.stanford.edu/

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Stanford OligoGenome - Welcome | oligogenome.stanford.edu Reviews
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Stanford Human OligoGenome comprises capture oligonucleotides which cover the the human genome
<META>
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1 [stanford university
2 hanlee ji
3 george natsoulis
4 oligogenome
5 oligo genome
6 oligo
7 oligonucleotide
8 human genome
9 \n cancer
10 cancer research
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version 1 0,query capture seqs,download zip file,technology approach,capture schema,oligogenome statistics,annotation codes,publications,data derived from,other links,stanford cancer center,stanford dna discovery,stanford genome technology
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Stanford OligoGenome - Welcome | oligogenome.stanford.edu Reviews

https://oligogenome.stanford.edu

Stanford Human OligoGenome comprises capture oligonucleotides which cover the the human genome

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oligogenome.stanford.edu oligogenome.stanford.edu
1

Stanford OligoGenome - Protocol

http://oligogenome.stanford.edu/faq_protocol

Stanford Human Oligo Genome Project. Ji Research Group - Stanford Genome Technology Center. View in UCSC Browser. The Human OligoGenome Resource. A Flexible Approach for Highly Multiplexed Candidate Gene Targeted Resequencing. Human genome build: 37.1. DbSNP build id: 131. Schema for Capture and Amplification by Selective Circularization. Stanford Genome Tech Center. Website provided by the Ji Research Group. School of Medicine and Genome Technology Center at Stanford University.

2

Stanford OligoGenome - Annotations

http://oligogenome.stanford.edu/faq_annotations

Stanford Human Oligo Genome Project. Ji Research Group - Stanford Genome Technology Center. View in UCSC Browser. The Human OligoGenome Resource. A Flexible Approach for Highly Multiplexed Candidate Gene Targeted Resequencing. Human genome build: 37.1. DbSNP build id: 131. This page describes the abbreviations for the oligo annotation codes. Whole Genome Exact Matches. Whole Genome 1bp Mismatches. Same as U0, but for genomic locations with exactly 1 mismatch to the targeting arm.

3

Stanford OligoGenome - Index

http://oligogenome.stanford.edu/zip_list

Stanford Human Oligo Genome Project. Ji Research Group - Stanford Genome Technology Center. View in UCSC Browser. The Human OligoGenome Resource. A Flexible Approach for Highly Multiplexed Candidate Gene Targeted Resequencing. Human genome build: 37.1. DbSNP build id: 131. All coordinates are in GFF format. Chromosome starts at base 1, interval includes end coordinate). If you have a large set of genomic regions you wish to capture, we recommend that you download these files and use BEDtools. The file ol...

4

Stanford OligoGenome - Ucsc View

http://oligogenome.stanford.edu/faq_ucsc_view

Stanford Human Oligo Genome Project. Ji Research Group - Stanford Genome Technology Center. View in UCSC Browser. The Human OligoGenome Resource. A Flexible Approach for Highly Multiplexed Candidate Gene Targeted Resequencing. Human genome build: 37.1. DbSNP build id: 131. Viewing Capture Regions in UCSC Genome Browser. Go to the UCSC Genome Browser Gateway page (http:/ genome.ucsc.edu/cgi-bin/hgGateway). And select Feb. 2009 (GRCh37 / hg19) as the genome assembly. Stanford Genome Tech Center. Website pr...

5

Stanford OligoGenome - Statistics

http://oligogenome.stanford.edu/faq_statistics

Stanford Human Oligo Genome Project. Ji Research Group - Stanford Genome Technology Center. View in UCSC Browser. The Human OligoGenome Resource. A Flexible Approach for Highly Multiplexed Candidate Gene Targeted Resequencing. Human genome build: 37.1. DbSNP build id: 131. Whole Genome In Silico. Total Number of Oligos. 2,160,412,134. 1,977,714,818. 1,759,938,713. 1,938,321,961. 2,852,444,206. Percent of Genome Covered. Percent of Oligos with U0 1. Percent of Oligos with P 0. Percent of CCDS Covered.

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Stanford OligoGenome - Welcome

Stanford Human Oligo Genome Project. Ji Research Group - Stanford Genome Technology Center. View in UCSC Browser. The Human OligoGenome Resource. A Flexible Approach for Highly Multiplexed Candidate Gene Targeted Resequencing. Human genome build: 37.1. DbSNP build id: 131. Welcome to the Stanford Human OligoGenome Project. Stanford Genome Tech Center. Website provided by the Ji Research Group. School of Medicine and Genome Technology Center at Stanford University. National Institutes of Health.

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