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About Me | Some useful scripts and tools in bioinformatics, biophysics and structural biology
https://omarsscripts.wordpress.com/about
Some useful scripts and tools in bioinformatics, biophysics and structural biology. Just another WordPress.com weblog. I am a graduate student at Rutgers University, pursuing a PhD at the BioMaPS Institute. Of Computational Biology and Molecular Biophysics. I work in the laboratory of Dr. Ronald Levy. I program in Java and in PERL using ECLIPSE. As my guiding light. December 26, 2011 at 8:24 PM. You have brought up a very good points , regards for the post. January 3, 2012 at 3:55 PM.
January | 2009 | Some useful scripts and tools in bioinformatics, biophysics and structural biology
https://omarsscripts.wordpress.com/2009/01
Some useful scripts and tools in bioinformatics, biophysics and structural biology. Just another WordPress.com weblog. Archive for January, 2009. How to make a heatmap in Mathematica. January 12, 2009 in Mathematica. In this example, I am importing in a tab separated file of a number matrix which I will use as input to the ArrayPlot command in Mathematica. I have also add tick labels. The commands and the final product are as follows:. Mut5 = Import[“… tabSeperatedFile.tsv”]. I made the plunge this month...
What is the point of this blog? | Some useful scripts and tools in bioinformatics, biophysics and structural biology
https://omarsscripts.wordpress.com/2009/01/12/what-is-the-point-of-this-blog
Some useful scripts and tools in bioinformatics, biophysics and structural biology. Just another WordPress.com weblog. What is the point of this blog? January 12, 2009 in Uncategorized. As a graduate student ( visit my research lab homepage. But I’m sure there are others like me on this planet, trying to find similar things, so I thought it might be useful to upload and share some of the tools, ideas and programming scripts that I have come across over the years. How to make a heatmap in Mathematica.
How to make a heatmap in Mathematica | Some useful scripts and tools in bioinformatics, biophysics and structural biology
https://omarsscripts.wordpress.com/2009/01/12/how-to-make-a-heatmap-in-mathematica
Some useful scripts and tools in bioinformatics, biophysics and structural biology. Just another WordPress.com weblog. How to make a heatmap in Mathematica. January 12, 2009 in Mathematica. In this example, I am importing in a tab separated file of a number matrix which I will use as input to the ArrayPlot command in Mathematica. I have also add tick labels. The commands and the final product are as follows:. Mut5 = Import[“… tabSeperatedFile.tsv”]. April 24, 2009 at 2:46 PM. Leave a Reply Cancel reply.
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blog off: Protein folding and docking on the Playstation
http://omarhaq.blogspot.com/2009/06/protein-folding-and-docking-on.html
Science, snakes, humor, politics.and everything in between. Thursday, June 4. Protein folding and docking on the Playstation. It's not just protein folding, but the powerful playstations can be used for other computationally demanding assignments such as ligand docking. I just read. Has released a version of their docking software for the PS3. To lower the cost and power consumption typically associated with compound-library-screening programs, SimBioSys has also released. Top 10 Snake Movies of all time.
blog off: Banning the burqa is not the solution, but it's a start
http://omarhaq.blogspot.com/2009/06/banning-burqa-is-not-solution.html
Science, snakes, humor, politics.and everything in between. Friday, June 26. Banning the burqa is not the solution, but it's a start. French President Sarkozy recently reignited the debate over the burqa or the veil that some. Muslim women wear. He said that the. Burqa is not a religious sign. It is a sign of subservience, a sign of debasement. It will not be welcome on the territory of the French Republic. Top 10 Snake Movies of all time. Why is protein folding so important? Birth Order and Intelligence.
blog off: Movie recommendation: Not One Less
http://omarhaq.blogspot.com/2006/12/movie-recommendation-not-one-less.html
Science, snakes, humor, politics.and everything in between. Thursday, December 14. Movie recommendation: Not One Less. I thought I'd step out of the usual scope of my posts and recommend a movie. Not one less. Is a Chinese movie directed by Zhang Yimou. You may know him from his recent movies, Hero and House of Flying Daggers. Sony distributes this film in the US and they have a pretty helpful promotional page. December 14, 2006 12:57 AM. Yeah - I just recently saw another chinese film. Beijing Bicyc...
blog off: Dealing with Static Electricity
http://omarhaq.blogspot.com/2007/02/dealing-with-static-electricity.html
Science, snakes, humor, politics.and everything in between. Tuesday, February 6. Dealing with Static Electricity. It's a bit amusing, I suppose, that my issues with static can warrant an entire post, but jokes aside, I hate static! I don't like the way clothes cling to me, how I get a tiny shock every time I touch anything, and how the hair on my legs and arms are constantly on red alert! Solutions are aplenty as well. An industrial source. Recommends rubbing your clothes on metal pipes. Okay. Rubbing me...
blog off: Top 10 Snake Movies of all time
http://omarhaq.blogspot.com/2008/10/top-10-snake-movies-of-all-time.html
Science, snakes, humor, politics.and everything in between. Friday, October 31. Top 10 Snake Movies of all time. As a movie buff, and especially a snake movie buff, I owe it to the world to reveal my top 10 Snake movies of all time. These movies have given me so much in return, besides the invaluable knowledge about our reptilian friends, that I feel obligated to honor them in this very special blog post. So what makes a great snake movie? What makes it stand out? Could it be the crazy unfathomable plot?
blog off: Places to visit in New Jersey or within driving distance of it
http://omarhaq.blogspot.com/2010/02/places-to-visit-in-new-jersey-or-within.html
Science, snakes, humor, politics.and everything in between. Wednesday, February 10. Places to visit in New Jersey or within driving distance of it. New Hope, PA, Lambertville, NJ. I know where it is now though, and I'll just have to wait till this summer to try it. I've been to both these towns a bunch of times, and it's always been fun. Cape May, NJ. East Stroudsburg, PA. My latest discovery and I don't think I'll ever get tired of it. This town is fantastic. It has a population of about 10,000 ...I fou...
blog off: I'm temporarily deactivating myself from facebook
http://omarhaq.blogspot.com/2009/03/im-temporarily-deactivating-myself-from.html
Science, snakes, humor, politics.and everything in between. Monday, March 30. I'm temporarily deactivating myself from facebook. I really need to focus in the next few months, so I'm going to do a little experiment here and deactivate myself temporarily from facebook. (Interesting to note that I think its not possible to delete ones account, which is kind of wierd and a little dangerous.). How has it been thus far? Top 10 Snake Movies of all time. Why is protein folding so important? BBC - Most popular.
blog off: Birth order and intelligence
http://omarhaq.blogspot.com/2008/09/birth-order-and-intelligence.html
Science, snakes, humor, politics.and everything in between. Sunday, September 28. Birth order and intelligence. A Time article last year. Initially sparked my interest. This article was based on a Norwegian scientific study. The Time article explains the reasons for the disparity in intelligence amongst siblings. Is it because of the lack of resources as another child comes along? The trends exist. In fact, tons of websites exist talking about birth order and some very obvious observations. Book recommen...
blog off: Book recommendation: The Namesake by Jhumpa Lahiri
http://omarhaq.blogspot.com/2007/01/book-recommendation-namesake-by-jhumpa.html
Science, snakes, humor, politics.and everything in between. Wednesday, January 31. Book recommendation: The Namesake by Jhumpa Lahiri. I recently read "The Namesake" by Pulitzer prize winning author, Jhumpa. The lady pictured below. I picked it up at Penn Station in New York City last Saturday and started it while traveling back home to Jersey. It was difficult to put down and I ended up finishing it at one sitting. The couple live in Cambridge and eventually have two children, Gogol and Sonali. But I su...
blog off: Why is protein folding so important?
http://omarhaq.blogspot.com/2008/10/why-is-protein-folding-so-important.html
Science, snakes, humor, politics.and everything in between. Thursday, October 2. Why is protein folding so important? Proteins are essential to life and carry out a multitude of tasks in the body; carry the oxygen you breathe, break down the food you eat, attack antigens that could harm your body etc. Each protein is made up of a specific. The picture I have shown above is a cartoon of HIV Protease, a 99 residue long dimer (it is made up of 2 chains), and is an example of a folded protein. I'm temporaril...
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Some useful scripts and tools in bioinformatics, biophysics and structural biology | Just another WordPress.com weblog
Some useful scripts and tools in bioinformatics, biophysics and structural biology. Just another WordPress.com weblog. How to make a heatmap in Mathematica. January 12, 2009 in Mathematica. In this example, I am importing in a tab separated file of a number matrix which I will use as input to the ArrayPlot command in Mathematica. I have also add tick labels. The commands and the final product are as follows:. Mut5 = Import[“… tabSeperatedFile.tsv”]. What is the point of this blog? I made the plunge this ...
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