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OncoScape

OncoScape is a package for cancer gene prioritization for the R statistical programming environment. It compares molecular profiling data of two groups of samples in order to identify genes that show significant differences between these groups. Currently, OncoScape performs an analysis of the five data types: (A) Gene Expression (B) DNA Copy Number (C) DNA Methylation (D) Mutation (E) shRNA knock-down data. Licensed under the MIT License. Cancer-type-specific top candidate genes. Combined score, calcula...

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OncoScape | oncoscape.nki.nl Reviews

<META> DESCRIPTION

OncoScape is a package for cancer gene prioritization for the R statistical programming environment. It compares molecular profiling data of two groups of samples in order to identify genes that show significant differences between these groups. Currently, OncoScape performs an analysis of the five data types: (A) Gene Expression (B) DNA Copy Number (C) DNA Methylation (D) Mutation (E) shRNA knock-down data. Licensed under the MIT License. Cancer-type-specific top candidate genes. Combined score, calcula...

<META> KEYWORDS

1 oncoscape

2 top candidate genes

3 user selected genes

4 single gene boxplots

5 genomic regions

6 pathways

7 summary

8 publication

9 contacts

10 shiny webapp

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oncoscape,top candidate genes,user selected genes,single gene boxplots,genomic regions,pathways,summary,publication,contacts,shiny webapp,license,select cancer type,select score type,select cut off score,select sample type,refresh results,times;,scores

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OncoScape | oncoscape.nki.nl Reviews

https://oncoscape.nki.nl

OncoScape is a package for cancer gene prioritization for the R statistical programming environment. It compares molecular profiling data of two groups of samples in order to identify genes that show significant differences between these groups. Currently, OncoScape performs an analysis of the five data types: (A) Gene Expression (B) DNA Copy Number (C) DNA Methylation (D) Mutation (E) shRNA knock-down data. Licensed under the MIT License. Cancer-type-specific top candidate genes. Combined score, calcula...

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ccb.nki.nl

Software | Computational Cancer Biology

http://ccb.nki.nl/software

Division of Molecular Carcinogenesis, The Netherlands Cancer Institute. Division of Molecular Carcinogenesis, The Netherlands Cancer Institute. Division of Molecular Carcinogenesis, The Netherlands Cancer Institute. A mixed model approach to IC50 estimation that enables simultaneous estimation of IC50 values across the entire set of cell lines and compounds. We show that this approach improves the accuracy of the estimates and significantly reduces the compute time. Data and scripts can be found here.

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OncoScape

OncoScape is a package for cancer gene prioritization for the R statistical programming environment. It compares molecular profiling data of two groups of samples in order to identify genes that show significant differences between these groups. Currently, OncoScape performs an analysis of the five data types: (A) Gene Expression (B) DNA Copy Number (C) DNA Methylation (D) Mutation (E) shRNA knock-down data. Licensed under the MIT License. Cancer-type-specific top candidate genes. Combined score, calcula...

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