opencobra.github.io
The openCOBRA ProjectThe openCOBRA Project
http://opencobra.github.io/
The openCOBRA Project
http://opencobra.github.io/
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The openCOBRA Project | opencobra.github.io Reviews
https://opencobra.github.io
The openCOBRA Project
opencobra.github.io
COBRApy
http://opencobra.github.io/cobrapy
Constraints-based modeling of biological networks. COBRApy maintained by opencobra. Published with GitHub Pages.
MASS-Toolbox
http://opencobra.github.io/MASS-Toolbox
Whack-a-Bug now online available. Poster and live demo at VIZBI 2014. Poster at ICSB 2013. First public release on Github! Download the toolbox. Unpack the toolbox. Install the toolbox. Toolbox`. 12 Mar 2014 - Niko Sonnenschein. The systems biology research group at UCSD is looking for a skilled Mathematica programmer to drive the further development of the MASS Toolbox. The official job anouncement and further details can be found here. The filing deadline is March 20, 2014. Bash the old bugger.
COBRA Toolbox
http://opencobra.github.io/cobratoolbox
COnstraints Based Reconstruction and Analysis Toolbox. A letter from the lead developer. As of Jan 30, 2015, I am now the Lead Developer for the COBRA Toolbox. I and others have already begun bringing the COBRA Toolbox up to date and the latest version is and will henceforth be available here: ( https:/ github.com/opencobra/cobratoolbox/. Older, but more stable versions are available here: ( https:/ github.com/opencobra/cobratoolbox/archive/master.zip. For *nix users and https:/ windows.github.com. Which...
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DD-DeCaF
http://dd-decaf.eu/index.html
Navigation arrow drop down. Bioinformatics Services for Data-Driven Design of Cell Factories and Communities. 1st edition of the DD-DeCaF newsletter now available! February 28, 2017). The first edition of the DD-DeCaF is now available, in this issue it is presented an overview of the project and its resources and a summary including the publications generated in the year 1 of the project. Webcast DD-DeCaF platform adds an interactive pathway viewer (January 25, 2017). Huerta-Cepas, Jaime and Forslund, Kr...
Cobra Toolbox and COBRApy | Systems Biology Research Group
http://systemsbiology.ucsd.edu/node/11
Skip to main content. Bernhard Palsson, Ph.D. COBRA Toolbox and COBRApy. Literature on COBRA Methods. Literature on Model-Driven Analysis. The Metabolism Disease Database. Cobra Toolbox and COBRApy. Go to the openCOBRA. A software package running in the MATLAB environment which allows for quantitative prediction of cellular behavior using a constraint-based approach. Becker, S. et al., "Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox".
breathmintsforpenguins.blogspot.com
Breath Mints for Penguins: evaluating boolean gene-reaction associations and assigning expression levels to reactions in stoichiometric models
http://breathmintsforpenguins.blogspot.com/2015/04/evaluating-boolean-gene-reaction.html
Breath Mints for Penguins. Monday, April 6, 2015. Evaluating boolean gene-reaction associations and assigning expression levels to reactions in stoichiometric models. Problem: You've got a stoichometric model. And an RNAseq dataset, and you want to use the transcriptome data to determine which reactions in the model are likely to be active, and at what level. To read the model and the RNAseq data. Use a pyparsing. Read on for details. For example: the boolean gene-reaction association 4*(AT3G22960) AND 4...
Cobra Toolbox and COBRApy | Systems Biology Research Group
http://gcrg.ucsd.edu/node/11
Skip to main content. Bernhard Palsson, Ph.D. COBRA Toolbox and COBRApy. Literature on COBRA Methods. Literature on Model-Driven Analysis. The Metabolism Disease Database. Cobra Toolbox and COBRApy. Go to the openCOBRA. A software package running in the MATLAB environment which allows for quantitative prediction of cellular behavior using a constraint-based approach. Becker, S. et al., "Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox".
Cobra Toolbox and COBRApy | Systems Biology Research Group
http://sbrg.ucsd.edu/node/11
Skip to main content. Bernhard Palsson, Ph.D. COBRA Toolbox and COBRApy. Literature on COBRA Methods. Literature on Model-Driven Analysis. The Metabolism Disease Database. Cobra Toolbox and COBRApy. Go to the openCOBRA. A software package running in the MATLAB environment which allows for quantitative prediction of cellular behavior using a constraint-based approach. Becker, S. et al., "Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox".
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OpenCOBOL - an open-source COBOL compiler
OpenCOBOL - an open-source COBOL compiler. OpenCOBOL 1.1 Feb2009. OpenCOBOL 2.0 dev2012. Welcome to the OpenCOBOL Website! Opencobol.org is in a state of hibernation. GnuCOBOL, (renamed from OpenCOBOL) is currently active on SourceForge. Current developments and conversations are at http:/ sourceforge.net/p/open-cobol/. Opencobol.org will remain here for archival purposes. There is a LOT of good reading to be had here, in the discussion forum. A nice history. Treat as READONLY. The official project name.
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The openCOBRA Project
Maintained by Daniel R. Hyduke. From Utah State University and Ali Ebrahim. Maintained by Nathan Lewis. From UCSD and Ronan Fleming. From the University of Luxembourg. Maintained by Niko Sonnenschein. At the Technical University of Denmark. Cobrapy 0.3.2 Released. PathwayPioneer visual reconstruction beta available. E coli ME-Model in Action. Yeast M-Model 6.0 Published. COBRA for Python App Note Published. COBRA for Python 0.2.1 Released. Human Metabolism Recon 2.0 Published. Added to the Foundry.
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