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PANDA.GENOMICS.ORG.CN

PandaDatabase

Basic Local Alignment Search Tool). Web Gene Ontology Annotation Plot). 3,000, confined to fragmented mountain habitats in Western China because of ecological and anthropogenic pressure. Assembly statistics (version: AilMel 1.0). 2,245,302,481. 2,299,498,912. Annotation statistics (version: AilMel 1.0). BGI Last Modified 4 Aug, 2009 Supported by BGI-shenzhen.

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PandaDatabase | panda.genomics.org.cn Reviews
<META>
DESCRIPTION
Basic Local Alignment Search Tool). Web Gene Ontology Annotation Plot). 3,000, confined to fragmented mountain habitats in Western China because of ecological and anthropogenic pressure. Assembly statistics (version: AilMel 1.0). 2,245,302,481. 2,299,498,912. Annotation statistics (version: AilMel 1.0). BGI Last Modified 4 Aug, 2009 Supported by BGI-shenzhen.
<META>
KEYWORDS
1 mapview
2 blast
3 download
4 links
5 karyotype from nash
6 genome sequence
7 repeatmasker tes
8 reference gene set
9 interpro domain annotation
10 gene ontology annotation
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mapview,blast,download,links,karyotype from nash,genome sequence,repeatmasker tes,reference gene set,interpro domain annotation,gene ontology annotation,heterozygous snp,fishing gene family,wego,cloud computing,gene,scaffold,with,about giant panda,number
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PandaDatabase | panda.genomics.org.cn Reviews

https://panda.genomics.org.cn

Basic Local Alignment Search Tool). Web Gene Ontology Annotation Plot). 3,000, confined to fragmented mountain habitats in Western China because of ecological and anthropogenic pressure. Assembly statistics (version: AilMel 1.0). 2,245,302,481. 2,299,498,912. Annotation statistics (version: AilMel 1.0). BGI Last Modified 4 Aug, 2009 Supported by BGI-shenzhen.

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panda.genomics.org.cn panda.genomics.org.cn
1

blast

http://panda.genomics.org.cn/page/panda/blast1.jsp

Blast (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. It is more than a tool to view sequences aligned with each other or to calculate percent homology, but a program to locate regions of sequence similarity with a view to comparing structure and function. 0){history.back(-1);}else{window.location.href='#'}" «Back. BGI Last Modified 4 Aug, 2009 Supported by BGI-shenzhen.

2

download

http://panda.genomics.org.cn/page/panda/download.jsp

High quality reads used for assembly:. High quality reads: FTP. Gene sets: (Include two homology-based and two de novo gene sets, and a merged reference gene set). 1 De novo prediction by Augustus software FTP. 2 De novo prediction by Genscan software FTP. 3 Homology based gene set to dog FTP. 4 Homology based gene set to human FTP. 5 The merged reference gene set (merge the above four gene sets) FTP. Functional annotation for the reference gene set: (Include GO, InterPro, and PANTHER). 1 CpG islands FTP.

3

links

http://panda.genomics.org.cn/page/panda/links.jsp

Yanhuang: The firt asian human genome. Fishing Gene Family) is a useful tool for finding gene family and plotting phylogenetic tree. Besides these, it also gives the gene duplication evolutional information. We named it Fishing Gene Family (FGF), because using a gene as bait you can fish all the gene family and the related information. FGF can be widely used in the analysis of gene duplication and gene family evolution,especially for the research of new functional gene by duplication.

4

help

http://panda.genomics.org.cn/page/panda/help.jsp

1 What can I found from the Panda Database? 2 How to use this database? 3 How did you assembly the large genome with so short reads? We assembled the short reads using SOAPdenovo, a genome assembler developed based on the de Bruijn graph theory. Firstly, we assembled the short reads from small insert-size libraries (. 4 How did you call SNPs, Indels and SVs by sequencing only one panda? Beijing Genomics Institute(BGI) - Shenzhen. 86 (0) 755 25273910. 86 (0) 755 25273620.

5

Panda Mapview

http://panda.genomics.org.cn/page/panda/mapview.jsp?dbKey=Panda&&refId=3

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panda.genomics.org.cn panda.genomics.org.cn

PandaDatabase

Basic Local Alignment Search Tool). Web Gene Ontology Annotation Plot). 3,000, confined to fragmented mountain habitats in Western China because of ecological and anthropogenic pressure. Assembly statistics (version: AilMel 1.0). 2,245,302,481. 2,299,498,912. Annotation statistics (version: AilMel 1.0). BGI Last Modified 4 Aug, 2009 Supported by BGI-shenzhen.

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