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papkelab.uconn.edu

Papke Lab at the University of Connecticut- Archaea

Evolution and Ecology of Haloarchaea. A systems approach towards the study of prokaryotic speciation. Our main goal is to understand the evolutionary processes acting on prokaryotic organisms, and tease apart interactions between them, to appreciate prokaryotic speciation from a systems-level. To achieve this, we. To answer these questions we concentrate on hypersaline adapted Archaea (halo.

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Papke Lab at the University of Connecticut- Archaea | papkelab.uconn.edu Reviews
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Evolution and Ecology of Haloarchaea. A systems approach towards the study of prokaryotic speciation. Our main goal is to understand the evolutionary processes acting on prokaryotic organisms, and tease apart interactions between them, to appreciate prokaryotic speciation from a systems-level. To achieve this, we. To answer these questions we concentrate on hypersaline adapted Archaea (halo.
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Papke Lab at the University of Connecticut- Archaea | papkelab.uconn.edu Reviews

https://papkelab.uconn.edu

Evolution and Ecology of Haloarchaea. A systems approach towards the study of prokaryotic speciation. Our main goal is to understand the evolutionary processes acting on prokaryotic organisms, and tease apart interactions between them, to appreciate prokaryotic speciation from a systems-level. To achieve this, we. To answer these questions we concentrate on hypersaline adapted Archaea (halo.

INTERNAL PAGES

papkelab.uconn.edu papkelab.uconn.edu
1

Papke Lab at the University of Connecticut- People

http://papkelab.uconn.edu/update2010/people.html

Research Interests: evolution and ecology of haloarchaea, prokaryotic speciation, horizontal gene transfer, microbial ecology, population genetics. PhD, Research Associate. Email: andrea.makkay@uconn.edu. PhD Student, Genetics and Genomics. Email: nikhil.ram mohan@uconn.edu. PhD Student, Genetics and Genomics. PhD Student, Genetics and Genomics. Email: matthew.ouellette@uconn.edu. PhD Student, Microbiology. Email: sean.pearson@uconn.edu. Email: sonya.haupt@uconn.edu. Email: klara.reisch@uconn.edu.

2

Papke Lab at the University of Connecticut- Archaea

http://papkelab.uconn.edu/index.html

Evolution and Ecology of Haloarchaea. A systems approach towards the study of prokaryotic speciation. Our main goal is to understand the evolutionary processes acting on prokaryotic organisms, and tease apart interactions between them, to appreciate prokaryotic speciation from a systems-level. To achieve this, we. To answer these questions we concentrate on hypersaline adapted Archaea (halo.

3

Papke Lab Publications

http://papkelab.uconn.edu/update2010/publications.html

Articles in refereed journals. Ventosa, A., De la Haba, R.R., Sánchez-Porro, C. and Papke, R.T. (2015) Microbial diversity of hypersaline environments: a metagenomic approach. Current Opinions in Microbiology.25:80-87. Papke, R.T., Corral, P., Ram-Mohan, N., de la Haba, R.R., Sánchez-Porro, C., Makkay, A. and Ventosa, A. (2015) Horizontal gene transfer, dispersal and haloarchaeal speciation. Life 5:1405-1426. Chimileski S, Franklin MJ and Papke RT (2014) Biofilms formed by the archaeon. Soucy S, Fullmer ...

4

Papke Lab at the University of Connecticut- Archaea

http://papkelab.uconn.edu/update2010/courses.html

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cmsee.uconn.edu cmsee.uconn.edu

Center for Microbial Systems, Ecology and Evolution (CMSEE) › University of Connecticut

http://www.cmsee.uconn.edu/Population_Genetics_Genomics_Matagenomics.html

Center for Microbial Systems,. Ecology and Evolution (CMSEE). Population Genetics, Genomics and Metagenomic Analyses. Study of digestive-tract symbioses using complementary approaches. Molecular parasites (inteins and homing endonucleases) in microbial populations using microcosm and metagenomic approaches. J Peter Gogarten's lab. Genomic Analyses to Understand the Diversity, Ecology and Evolution of Multipartite Microbial Symbioses. Population genealogical history (especially the effect the meiotic reco...

cmsee.uconn.edu cmsee.uconn.edu

Center for Microbial Systems, Ecology and Evolution (CMSEE) › University of Connecticut

http://www.cmsee.uconn.edu/Genetic_Analyses.html

Center for Microbial Systems,. Ecology and Evolution (CMSEE). Study of digestive-tract symbioses using complementary approaches. Dissecting Microbial Symbiotic Interaction Networks. The evolution of determinants of ligand binding in periplasmic sugar binding proteins from Thermotogales and archaea. Understanding how beneficial symbioses are established and maintained. An integrative approach to understanding the unique symbiotic association between a marine mollusc and algal plastids.

cmsee.uconn.edu cmsee.uconn.edu

Center for Microbial Systems, Ecology and Evolution (CMSEE) › University of Connecticut

http://www.cmsee.uconn.edu/Functional_Genomics.html

Center for Microbial Systems,. Ecology and Evolution (CMSEE). Study of digestive-tract symbioses using complementary approaches. Transcriptomic and metatranscriptomic studies using high-throughput sequencing. S lab studies molecular ecology, evolution, and functional genomics of marine algae. Current research focuses on genome and transcriptome sequencing and analyses on dinoflagellates and other algae using high-throughput techniques. S research interests are microbe-host interactions and evolution of m...

cmsee.uconn.edu cmsee.uconn.edu

Center for Microbial Systems, Ecology and Evolution (CMSEE) › University of Connecticut

http://www.cmsee.uconn.edu/GenomeEvolution.html

Center for Microbial Systems,. Ecology and Evolution (CMSEE). Reconstruction of the reticulated genome phylogeny from genomic data. J Peter Gogarten's lab. Reticulate evolution. The gene tree and species tree problem (focus on incomplete lineage sorting). Is interested in Computational Biology and Bioinformatics. Currently, the main research is mainly on computational problems in population genomics, phylogenetics and high-throughput sequencing. Studies microbial community ecology, especially using the f...

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Papke Lab at the University of Connecticut- Archaea

Evolution and Ecology of Haloarchaea. A systems approach towards the study of prokaryotic speciation. Our main goal is to understand the evolutionary processes acting on prokaryotic organisms, and tease apart interactions between them, to appreciate prokaryotic speciation from a systems-level. To achieve this, we. To answer these questions we concentrate on hypersaline adapted Archaea (halo.

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