genomics.cribi.unipd.it
Projects | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/projects
Our research group deals with several aspects of genomics and bioinformatics, both with biological and technological interests. Human Genome (and Exome) resequencing. RNA-Seq, Bisulfite-Seq, ChIP-Seq. Bioinformatic algorithms and strategies. Sequence alignment algorithms for short reads and bisulfite sequencing ( PASS. Genome assembly and scaffolding ( ScaMPI. Complex query for large dataset data-mining ( QueryOR. Structural variations identifications, SNP calling. Gene expression profiling via RNA-Seq.
genomes.cribi.unipd.it
Genomes portal - CRIBI, University of Padua
http://genomes.cribi.unipd.it/index.php?page=news
30 June, 2013. Genome portal goes public. For the genome and functional annotation of the oleaginous microalga. Is online. The genome, sequenced at the CRIBI Biotechnology Center, is a high-quality assembly with scaffolds at chromosomal scale. The genome browser contains annotation track as well as strand specific RNA-Seq of four samples. A powerful query system allows the user to retrieve complex lists of genes satisfying multiple constrains. Go to the genome ». 19 June, 2013. 10 January, 2013. Our grou...
genomics.cribi.unipd.it
PASS-BIS: A novel aligner for methylome studies | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/bioinformatics/pass-bis-methylome
PASS-BIS: A novel aligner for methylome studies. August 29, 2013. We recently published and released PASS-BIS. A modified version of the PASS aligner to enable fast and efficient bisulfite-treated reads mapping, both in color-space and in base-space. The article is online. And the PASS-BIS package. Is freely available for download. This entry was posted in Bioinformatics. PASS-BIS: A novel aligner for methylome studies. ScaMPI: a user friendly framework for genome assembly.
genomics.cribi.unipd.it
Blog | Giorgio Valle Group | Genomics and Bioinformatics Unit – University of Padua
http://genomics.cribi.unipd.it/main/blog
PASS-BIS: A novel aligner for methylome studies. August 29, 2013. We recently published and released PASS-BIS. A modified version of the PASS aligner to enable fast and efficient bisulfite-treated reads mapping, both in color-space and in base-space. The article is online. And the PASS-BIS package. Is freely available for download. Comments Off on PASS-BIS: A novel aligner for methylome studies. August 25, 2013. Has been published online. Continue reading →. August 9, 2013. Comments Off on QueryOR. Proje...