pazar.info
Search for Transcription Factors (TFs) | PAZARAn open-access system for the collection and dissemination of regulatory sequence annotation
http://www.pazar.info/
An open-access system for the collection and dissemination of regulatory sequence annotation
http://www.pazar.info/
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Search for Transcription Factors (TFs) | PAZAR | pazar.info Reviews
https://pazar.info
An open-access system for the collection and dissemination of regulatory sequence annotation
Help | PAZAR
http://www.pazar.info/cgi-bin/help_FAQ.pl
2 Search by Transcription Factor. 3 Search by Gene. 4 Search by Sequence. 5 Search by pre-computed Transcription Factor Binding Profile. 6 Search within a specific Boutique Project. 2 Submission Interface Screenshots. 3 Frequently Asked Questions. PAZAR is a software framework for the construction and maintenance of regulatory sequence data annotations which allows multiple boutique databases to function independently within a larger system (or information mall). For more information, see the Overview.
The PAZAR Mall | PAZAR
http://www.pazar.info/cgi-bin/mallmap.pl
Welcome to the PAZAR Mall! PAZAR is your one stop shopping experience for transcription factors and regulatory sequence annotations. PAZAR can be searched by gene. Bull; view the mall overview and introduction tutorial.
Downloads | PAZAR
http://www.pazar.info/cgi-bin/downloads.pl
Data from public projects are available in XML and GFF formats. Go to TF - target gene listing downloads. Go to ChIP-Seq peak file downloads. Go to GFF downloads. Go to XML downloads. Data can also be extracted programmatically using the PAZAR API. To learn more about it, visit the API Documentation.
PAZAR Webinars
http://www.pazar.info//webinars/webinars.html
November 24, 2009. Introduction to new data and modifications in the JASPAR and PAZAR resources. January 11, 2012. Depositing ChIP-Seq identified regions: sharing your data with collaborators or the world. Summary: A guide for scientists with ChIP-Seq "peaks" who would like to share the data with collaborators or the general public. A convenient means to share the results of ChIP-Seq experiments described in research publications. Slide 7 corrected: 80,000 genes, not 3,000). January 18, 2012.
Links | PAZAR
http://www.pazar.info/cgi-bin/links.pl
Given a count matrix summarizing the binding sites for a TF, predict TFBS in a sequence of your choice. Given a set of regulatory sequences, you wish to find new patterns that might be a novel type of TFBS. You have recovered a new TFBS pattern (count matrix) and wish to see if the pattern resembles other known TFBS profiles. Once you find a pattern, it is natural to want to compare it against a database of patterns to see if it matches a characterized type of TFBS. Http:/ jaspar.genereg.net/. Http:/ mem...
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主要转录因子数据库
http://www.bio123.com.cn/htmls/TFDB/indexl.htm
数据库是基于真核生物转录调控所 建立的数据库 ,. 其中收集了大量与基因转录水平有关 的数据 ,. 公开版版 本的版本号为 TRANSFAC7.0;. 该数据库是由哥 本哈根大学 (University of Copenhagen). The Mouse Transcription Factor Database). 基因组科学中心 (RIKEN Genomic Sciences Center, GSC). 的基因组探测 研究组实验室 (Laboratory for Genome Exploration Re- search Group). Transcription Regulatory Regions Database). 该数据库由俄罗斯科学院西 伯利亚部的细胞学与遗传学研究所 (Institute of Cytol-ogy and Genetics, Siberian Department of the Russian Academy of Sciences, Novosibirsk, Russia). 数据库 包含的数据 种类及数据 量见表. 是基于研究基 因调控网络的需要而建立的数据库 ,.
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Search for Transcription Factors (TFs) | PAZAR
View interactive mall map. Requires Adobe Flash player). Select a TF from our list of reported TFs. Bull; View advanced search options. Select a TF from our list of reported TFs. Bull; Hide advanced search options. You may select which projects you would like to exclude. Select a gene from our list of annotated genes. Bull; Show advanced search options. Select a gene from our list of annotated genes. Bull; Hide advanced search options. You may select which projects you would like to exclude. It is a soft...
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