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philipp berens | cell type specific computations

cell type specific computations

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philipp berens | cell type specific computations | philippberens.wordpress.com Reviews

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cell type specific computations

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Klaus Tschira Award for the Public Understanding of Science – neural data science

https://philippberens.wordpress.com/2013/10/14/klaus-tschira-award-for-the-public-understanding-of-science

Klaus Tschira Award for the Public Understanding of Science. October 14, 2013. Last week, I got the Klaus Tschira Award. For the Public Understanding of Science for my dissertation and an article describing my thesis work in an accessible fashion. The article appears in Bild der Wissenschaft. A German popular science magazine and can be found here: ‘ The programming language of the brain. 8216; (in German). Posted in Not assigned. Public Understanding of Science. Talk at iCoNeT Conference.

2

philippberens – neural data science

https://philippberens.wordpress.com/author/philippberens

Technical comment and response published in Science. September 21, 2016. Last year, we published our study “Principles of connectivity among morphologically defined cell types in adult neocortex” in Science. The paper generated quite a bit of attention – and now a technical comment. Details of our reply. In the course of preparing the reply, we also submitted all fully reconstructed neurons from that study (n=298) to neuromorpho.org. Where they will be available shortly. June 30, 2016. July 4, 2016.

3

neural data science – Page 2 – neural data science

https://philippberens.wordpress.com/page/2

November 27, 2015. November 30, 2015. Our new paper has been published today in Science. In this work lead by Xiaolong Jiang in Andreas Tolias’ lab. At Baylor College of Medicine in Houston, we classified cortical interneurons in adult mice and mapped their connectivity diagram. Interestingly, three simple rules go a long way in explaining the structure of the connectivity matrix. For me, this is a nice piece of heroic wet-lab work combined with the right level of machine learning based analysis. Worksho...

4

Talk at BCCN Workshop on Natural Scenes – neural data science

https://philippberens.wordpress.com/2014/08/25/talk-at-bccn-workshop-on-natural-scenes

Talk at BCCN Workshop on Natural Scenes. August 25, 2014. On September 2nd, I will give a talk at the workshop “ Characterizing Natural Scenes: Retinal Coding and Statistical Theory”. Organized by Arno Onken and Jian Liu about our recent Nature Neuroscience paper “ Population code in mouse V1 facilitates readout of natural scenes through increased sparseness”. I am looking forward to an exciting workshop program and interesting discussions! Posted in Not assigned. Leave a Reply Cancel reply.

5

Publications – neural data science

https://philippberens.wordpress.com/publications

Behrens* C., T. Schubert*, S. Haverkamp, T. Euler, P. Berens. 2016): Connectivity map of bipolar cells and photoreceptors in the mouse retina. bioRxiv. Franke* K., P. Berens. T Schubert, M. Bethge, T. Euler, T. Baden (2016):Balanced excitation and inhibition decorrelates visual feature representation in the mammalian inner retina. bioRxiv. Yatsenko D., J. DataJoint: managing big scientific data using MATLAB or Python. bioRxiv. Jiang X, S. Shen, F. Sinz. 353 (6304), 1108, link. 90(3), 471-482, link. Q Den...

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badenlab.org badenlab.org

Members – Baden lab

https://badenlab.org/members

Systems Neuroscience: Vision and Visual Ecology. We are located at Sussex Neuroscience. School of Life Sciences, University of Sussex, Brighton, UK. The lab also maintains a co-affiliation. With The Institute for Ophthalmic Research. At the University of Tübingen, Germany. Inquiries to join the lab are always welcome. How to apply. Open fully funded 4-year PhD position. In collaboration with Julie Semmelhack. Hong Kong). Deadline May 2nd 2017. Tom Baden, PhD. Tbaden at sussex.ac.uk. Chris Forman, PhD.

tomwallis.info tomwallis.info

statistics | Practical Vision Science

https://tomwallis.info/tag/statistics

Tom Wallis blogs about vision science, open science and data analysis. New paper: Unifying saliency metrics. How well can we predict where people will look in an image? A large variety of models have been proposed that try to predict where people look using only the information provided by the image itself. The MIT Saliency Benchmark. For example, compares 47 models. So which model is doing the best? Over a year ago, I wrote this blog post. The code is available here. Proceedings of the National Academy ...

tomwallis.info tomwallis.info

Teaching | Practical Vision Science

https://tomwallis.info/category/teaching

Tom Wallis blogs about vision science, open science and data analysis. Exploring GLMs with Python. A few months ago Philipp Berens. And I ran a six week course introducing the Generalised Linear Model to graduate students. We decided do run the course in Python and to use the IPython Notebook. To present the lectures. You can view the lecture notes here. And get the source code here. The six lectures were:. Introduction by us, then student group presentations of a points of significance. The notebooks al...

tomwallis.info tomwallis.info

generalised linear model | Practical Vision Science

https://tomwallis.info/tag/generalised-linear-model

Tom Wallis blogs about vision science, open science and data analysis. Exploring GLMs with Python. A few months ago Philipp Berens. And I ran a six week course introducing the Generalised Linear Model to graduate students. We decided do run the course in Python and to use the IPython Notebook. To present the lectures. You can view the lecture notes here. And get the source code here. The six lectures were:. Introduction by us, then student group presentations of a points of significance. The notebooks al...

tomwallis.info tomwallis.info

Python | Practical Vision Science

https://tomwallis.info/category/python

Tom Wallis blogs about vision science, open science and data analysis. Exploring GLMs with Python. A few months ago Philipp Berens. And I ran a six week course introducing the Generalised Linear Model to graduate students. We decided do run the course in Python and to use the IPython Notebook. To present the lectures. You can view the lecture notes here. And get the source code here. The six lectures were:. Introduction by us, then student group presentations of a points of significance. The notebooks al...

tomwallis.info tomwallis.info

Python | Practical Vision Science

https://tomwallis.info/tag/python

Tom Wallis blogs about vision science, open science and data analysis. Exploring GLMs with Python. A few months ago Philipp Berens. And I ran a six week course introducing the Generalised Linear Model to graduate students. We decided do run the course in Python and to use the IPython Notebook. To present the lectures. You can view the lecture notes here. And get the source code here. The six lectures were:. Introduction by us, then student group presentations of a points of significance. The notebooks al...

mackelab.org mackelab.org

Resources - mackelab@caesar

http://www.mackelab.org/resources

To copy this link hit. We have started to share code accompanying our publications, most of it in Matlab or Python. This listing also includes packages for which a substantial portion of the code was developed by collaborators of the group. Details and references can be found in repositories. Gaussian Process methods for modelling cortical maps. The method was developed with Matthias Bethge. And is described in Macke et al 2011. And Macke et al 2010. Modelling inter-trial dependence in psychophysics.

tomwallis.info tomwallis.info

Exploring GLMs with Python | Practical Vision Science

https://tomwallis.info/2015/07/08/exploring-glms-with-python

Tom Wallis blogs about vision science, open science and data analysis. Exploring GLMs with Python. A few months ago Philipp Berens. And I ran a six week course introducing the Generalised Linear Model to graduate students. We decided do run the course in Python and to use the IPython Notebook. To present the lectures. You can view the lecture notes here. And get the source code here. The six lectures were:. Introduction by us, then student group presentations of a points of significance. The notebooks al...

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philipp berens | cell type specific computations

Cell type specific computations. April 11, 2011. June 11, 2015. I am a neuroscientist and statistician and use machine learning and data analytics to identify cell types, circuits and computations in the healthy and diseased visual system. I work in the labs of Matthias Bethge. At the University of Tübingen and collaborate closely with Andreas Tolias. At Baylor College of Medicine. See my Research. Page for my current projects and interests. Code for spike inference available. August 3, 2015. May 4, 2015.

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Philipp Berger - Social Media Researcher

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Willkommen auf PhilippBerger.de. Neue Stadt - neue Homepage. Dies ist die sichtbare Spitze des Eisberges von Diensten, die ich im Internet anbiete. Ich werde versuchen in dem kleinen Blog ab und an über interessante Themen und Dinge zu berichten, die mir im Laufe meiner Arbeit, meines Studiums oder einfach im Alltag begegnen - meistens werden sich die Themen um Informatik, Physik, Mathematik und Philosophie drehen, doch wer wei&szlig das schon - allgemein ist aber mehr Leere zu erwarten.

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