phrap.org

stothard.afns.ualberta.ca

Stothard Research Group

http://stothard.afns.ualberta.ca/public_html/links.html

Integrative Genomics Viewer (IGV). Microbial Ecology and Metagenomics. Gene Association and QTL Mapping. Red Hat Linux manuals. Victoria, British Columbia. London, United Kingdom. Seoul, South Korea. University of Alberta (Google Maps). University of Alberta (PDF). Edmonton International Airport (Google Maps). Victoria, BC (Google Maps). Valid XHTML 1.0 Strict. Last updated: July 18, 2016.

fantom2.gsc.riken.go.jp

FANTOM

http://fantom2.gsc.riken.go.jp/fantom2/doc/links.html

Computational analyses and curation. FANTOM cDNA annotation system (CAS). T Kasukawa et al. in preparation. Web-based system for human curation of sequences. T Kasukawa et al. in preparation. Displays seqencing quality (PHRED) scores. M Furuno et al. in preparation. Graphical viewer that shows homologous regions to protein sequences and start/stop condons for each frame. J Adachi et al. in preparation. RIKEN cDNA sequence clustering, viewer, and editor. RIKEN expression array database. FASTY is a program...

bioinformatication.blogspot.com

bioinformatics: Human Genome Project

http://bioinformatication.blogspot.com/2007/06/human-genome-project.html

Wednesday, June 13, 2007. Identify all the approximately 30,000 genes in human DNA. Determine the sequence of the 3 billion chemical base pairs that make up human DNA. Store this information in databases,. Improve tools for data analysis,. Transfer related technologies to the private sector, and. Address the ethica, legal, and social issues (ELSI) that may rise from the project. And Why is it important? Http:/ www.phrap.org/. Http:/ www.rockefeller.edu/magpie/. Http:/ www.tigr.org/softlab/. 2D-PAGE analy...

nre.cb.bscb.cornell.edu

NRE: Frequently Asked Questions

http://nre.cb.bscb.cornell.edu/nre/faq.html

What kind of output does NRE produce? How long should my query take? What are all the columns/filtering parameters? Where do the estimates for diversity, recombination rate, and distance to the nearest gene come from? What is the difference between genomic regions to exclude and genomic regions for which to calculate percent overlap? Why is my output blank? Where can I download the available filter tracks, or additional tracks to use as filters? I have other questions/comments/suggestions. And other publ...

bioinformatication.blogspot.com

bioinformatics: June 2007

http://bioinformatication.blogspot.com/2007_06_01_archive.html

Wednesday, June 13, 2007. DNA Microarray - A technology that is reshaping molecular biology. Base-pairing (i.e., A-T and G-C for DNA; A-U and G-C for RNA) or hybridization is the underlining principle of DNA microarray. Identification of sequence (gene / gene mutation) and. Determination of expression level (abundance) of genes. There are two variants* of the DNA microarray technology, in terms of the property of arrayed DNA sequence with known identity:. An array of oligonucleotide (20 80-mer oligos) or...

cmb.washington.edu

Computational Molecular Biology program

http://cmb.washington.edu/faculty.htm

UW Computational Molecular Biology. Akeyj [ a t ] u.washington.edu. UW Biochemistry; Adjunct UW Genome Sciences, Bioengineering, Computer Science and Engineering, Chemical Engineering, and Physics. Dabaker [ a t ] u.washington.edu. UW Bioengineering; Adjunct UW Radiology. Jbb2 [ a t ] uw.edu. FHCRC; Affiliate UW Epidemiology. Trevor [ a t ] bedford.io. Cbergst [ a t ] uw.edu. FHCRC Basic Sciences; Affiliate UW Genome Sciences. Jbloom [ a t ] fhcrc.org. Hbolouri [ a t ] fhcrc.org. Rogerb [ a t ] uw.edu.

computational-genomics.net

Computational Genomics

http://www.computational-genomics.net/resources/software.html

Software Tools for Sequence Analysis:. A tool for viewing and managing genomic data. Artemis: genome viewer and annotation tool, and ACT: (Artemis Comparison Tool) a DNA sequence comparison viewer based on Artemis. Basic Local Alignment Search Tool for sequence similarity searching against nucleotide and protein databases. Wwwncbi.nlm.nih.gov/BLAST. Compare two sequences using BLAST (both sequences either protein or nucleotide). A suite of around 100 bioinformatics tools. A BLAST output filtering tool.

bioinformatics.ysu.edu

Frequently Asked Questions about the ASFinder Server

http://bioinformatics.ysu.edu/tools/docs/ASFinder_faq.html

Frequently Asked Questions about the ASFinder Server. The ASFinder (AS-Finder) server was implemented by Dr. Xiang Jia (Jack) Min. In the Bioinformatics Laboratory, Proteomics/Genomics Research Group,. Youngstown State University (YSU). The work was supported by the YSU Research Professorship award (2009 - 2010) and the STEM Dean's Reassigned Time. How does it work? 1) A file contains EST-derived sequences (ESTs, cDNAs or contig sequences assembled from ESTs) in FASTA. See Min et al. 2009. If the EST dat...