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PHYDE.DE

PhyDE® - Phylogenetic Data Editor

PhyDE (Phylogenetic Data Editor) is a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data. PhyDE is a registered trade mark of Jörn Müller. Christoph Neinhuis and Dietmar Quandt. Concept: Kai Müller, Jörn Müller, Dietmar Quandt. Programming: Jörn Müller. Key plugins: Kai Müller.

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PhyDE® - Phylogenetic Data Editor | phyde.de Reviews

https://phyde.de

PhyDE (Phylogenetic Data Editor) is a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data. PhyDE is a registered trade mark of Jörn Müller. Christoph Neinhuis and Dietmar Quandt. Concept: Kai Müller, Jörn Müller, Dietmar Quandt. Programming: Jörn Müller. Key plugins: Kai Müller.

INTERNAL PAGES

phyde.de phyde.de
1

PhyDE® - Phylogenetic Data Editor

http://www.phyde.de/download.html

PhyDE-1, v0.9971. ZIP compressed JAR file. Unzip, and then execute with java -jar PhyDE-1.jar. The current version is 0.9971 from Nov 23., 2010. This version requires Java 5.0 (JRE 1.5). The default settings of some versions of OS X seem to be that the above zip archive is decompressed recursively, and a jar file is also a zip archive. To avoid that, you could use "unzip" in the command-line. Converts ABI files to SCF. Write header data of alignment files to text file. What's new in 0.997?

2

PhyDE - Phylogenetic Data Editor

http://www.phyde.de/docu/docu.html

Character sets, Taxon sets. The PDE file format. PhyDE is a viewer and editor for alignments. It can read and write the alignment formats NEXUS and FASTA and uses compressed XML files (suffix .pde) as its native format. Pherograms must be in the format SCF 2.0-3.1/16bit. These are recognized by the suffixes .scf or .scf.gz, the latter being GZIP-compressed. A plugin. To convert ABI files to SCF exists. In addition to usual alignment files, PhyDE supports so called " projects. At the desired column and us...

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bioinfweb.info bioinfweb.info

SeqState

http://bioinfweb.info/Software/SeqState

141 (Oct 2, 2008 11:00:00 PM). Primer design, sequence statistics, and indel coding according to various schemes. SeqState - primer design and sequence statistics for phylogenetic DNA data sets. Incorporating information from length-mutational events into phylogenetic analysis. Molecular Phylogenetics and Evolution.

bioinfweb.info bioinfweb.info

Software

http://bioinfweb.info/Software

This page lists the software projects Ben Stöver. Or Kai Müller. Are involved in. We provide this site in addition to our group web page at the WWU. To guarantee stable URLs and provide a central platform also for cooperation projects. Note that this list also contains legacy software replaced by follow-up projects. Hide precursors of other software. Müller, Kai. Müller, Jörn. Stöver, Ben. Http:/ treegraph.bioinfweb.info/. 260 beta (Apr 7, 2016 7:00:00 PM). 200 (Oct 29, 2015 4:00:00 PM). A Java library c...

bioinfweb.info bioinfweb.info

About bioinfweb.info

http://bioinfweb.info/About

About bioinfweb.info (Impressum). Responsible for this website:. In accordance with 5 Telemediengesetz and 55 Staatsvertrag für Rundfunk und Telemedien). Institute for Evolution and Biodiversity. University of Münster. Statutory body and an institution of the state of North Rhine-Westphalia,. Körperschaft des öffentlichen Rechts und zugleich eine Einrichtung des Landes Nordrhein-Westfalen). Hüfferstraße 1. Ministry for innovation, science and research of North Rhine-Westphalia.

bioinfweb.info bioinfweb.info

PRAP2

http://bioinfweb.info/Software/PRAP2

20 (Dec 30, 2007 12:00:00 AM). Parsimony and likelihood ratchet analyses with PAUP*. Wall P, Leebens-Mack J, Müller K. Field D, Altman N, dePamphilis C: PlantTribes: A gene and gene family resource for comparative genomics in plants. Nucleic Acids Research. The efficiency of different search strategies in estimating parsimony jackknife, bootstrap, and Bremer support.

bioinfweb.info bioinfweb.info

News - bioinfweb

http://bioinfweb.info/News

Jul 26, 2016: Version 2.10.1 of TreeGraph released. A new version of our phylogenetic tree editor can be downloaded from [LINK http:/ treegraph.bioinfweb.info/Download http:/ treegraph.bioinfweb.info/Download. Jul 12, 2016: Version 2.10.0 of TreeGraph released. A new version of our phylogenetic tree editor can be downloaded from http:/ treegraph.bioinfweb.info/Download. Apr 07, 2016: Version 2.9.2 of TreeGraph released. Mar 24, 2016: Version 2.9.1 of TreeGraph released. Our servers are undergoing mainten...

bioinfweb.info bioinfweb.info

Subversion repositories

http://bioinfweb.info/Code/sventon/repos/list

The following list contains the available subversion repositories on bioinfweb. Each link will take you into the according project page. Sventon subversion web client - http:/ www.sventon.org. Sventon 2.5.1.

bioinfweb.info bioinfweb.info

XML Namespaces

http://bioinfweb.info/xmlns

This site lists all defined XML formats used in projects of BioInfWeb. The list may not contain all formats of projects in an early development stage. File formats which are not in XML are not listed here. You may find their documentation on the homepage of the respective project. This XML format is used to store application versions. It is usually referenced by other XML schemas and not used directly. This XML format is used to store the results of the software HIR-Finder.

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PhyDE® - Phylogenetic Data Editor

PhyDE (Phylogenetic Data Editor) is a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data. PhyDE is a registered trade mark of Jörn Müller. Christoph Neinhuis and Dietmar Quandt. Concept: Kai Müller, Jörn Müller, Dietmar Quandt. Programming: Jörn Müller. Key plugins: Kai Müller.

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Home Page of Michael Persons. Site Last Modified: 2005-02-22. This Page Last Modified: 2005-02-22. No snazzy graphics or fancy programming adorn this page. It is my minimal outpost on the web.

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phydeau (Eric) | DeviantArt

Window.devicePixelRatio*screen.width 'x' window.devicePixelRatio*screen.height) :(screen.width 'x' screen.height) ; this.removeAttribute('onclick')". Deviant for 12 Years. 11 Month Core Membership. Daily Pageviews ». Be ready to get confused. This is the place where you can personalize your profile! By moving, adding and personalizing widgets. You can drag and drop to rearrange. You can edit widgets to customize them. The bottom has widgets you can add! We've split the page into zones! Why," you ask?

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phydeau's Journal

Most Recent Entries] [Calendar View]. Below are the 20. Most recent journal entries recorded in phydeau. Wednesday, January 18th, 2012. On Wednesday Jan. 18th thousands of sites will go dark to protest SOPA and PIPA, two US bills racing through Congress that threaten prosperity, online security, and freedom of expression. This is not just administrators, this is EVERYONE. Take these 12 hours from 8 AM EST to 8 PM EST, and do not use any websites. January 18, 2012. SOPA is described as the blacklist bill ...

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