PHYDESIGN.TOWNSEND.YALE.EDU

PhyDesign: Home

Input a site rate file. To estimate phylogenetic informativeness profiles ( Townsend 2007. The PhyDesign web application is partitioned into of 3 components:. A form to upload information and choose an application to calculate the substitution rates for each alignment site,. A table listing the rate vectors produced by the analysis, including links for download, and. A user-friendly graphical interface to plot phylogenetic profiles and calculate integration values. In Newick (recommended) or nexus format.

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PhyDesign: Home | phydesign.townsend.yale.edu Reviews

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Input a site rate file. To estimate phylogenetic informativeness profiles ( Townsend 2007. The PhyDesign web application is partitioned into of 3 components:. A form to upload information and choose an application to calculate the substitution rates for each alignment site,. A table listing the rate vectors produced by the analysis, including links for download, and. A user-friendly graphical interface to plot phylogenetic profiles and calculate integration values. In Newick (recommended) or nexus format.

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1 phydesign home

2 instructions

3 townsend lab

4 alignment file

5 upload alignment

6 chronogram file

7 upload tree

8 choose program

9 hyphy dna

10 dnarates dna

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phydesign home,instructions,townsend lab,alignment file,upload alignment,chronogram file,upload tree,choose program,hyphy dna,dnarates dna,rate4site aa,bayestraits,advanced options,instead,site rate file,upload vectors,chronogram file optional,back to

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PhyDesign: Home | phydesign.townsend.yale.edu Reviews

https://phydesign.townsend.yale.edu

Input a site rate file. To estimate phylogenetic informativeness profiles ( Townsend 2007. The PhyDesign web application is partitioned into of 3 components:. A form to upload information and choose an application to calculate the substitution rates for each alignment site,. A table listing the rate vectors produced by the analysis, including links for download, and. A user-friendly graphical interface to plot phylogenetic profiles and calculate integration values. In Newick (recommended) or nexus format.

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phydesign.townsend.yale.edu

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PhyDesign FAQ

http://phydesign.townsend.yale.edu/faq.html

What does PhyDesign compute? What kind of questions can one answer by measuring phylogenetic informativeness? This method needs prior data to get the phylogenetic informativeness profiles. Where can I obtain this data? Are there known issues with this method of profiling? Can this method of profiling be improved? Do I have to upload gene by gene, or can I analyze more than one gene at a time? Can I get phylogenetic informativeness profiles for morphological data? How to cite PhyDesign? PhyDesign uses the...

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PhyDesign: Instructions

http://phydesign.townsend.yale.edu/instructions.html

The PhyDesign web application consists of 3 components:. A form to upload information and choose an application to calculate the evolutionary rates for each alignment site,. A table listing the site rates produced by the analysis, including links for download, and. A user-friendly graphical interface to plot the phylogenetic profiles and calculate integration values. You can use the following files to test the PhyDesign web application ( Right click and save link as. BMC Evol. Biol. Mol Biol. Evol. Towns...

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PhyDesign: Home

http://phydesign.townsend.yale.edu/index.html

Input a site rate file. To estimate phylogenetic informativeness profiles ( Townsend 2007. The PhyDesign web application is partitioned into of 3 components:. A form to upload information and choose an application to calculate the substitution rates for each alignment site,. A table listing the rate vectors produced by the analysis, including links for download, and. A user-friendly graphical interface to plot phylogenetic profiles and calculate integration values. In Newick (recommended) or nexus format.

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phydesign.townsend.yale.edu

PhyDesign: Home

Input a site rate file. To estimate phylogenetic informativeness profiles ( Townsend 2007. The PhyDesign web application is partitioned into of 3 components:. A form to upload information and choose an application to calculate the substitution rates for each alignment site,. A table listing the rate vectors produced by the analysis, including links for download, and. A user-friendly graphical interface to plot phylogenetic profiles and calculate integration values. In Newick (recommended) or nexus format.

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