phylotree.org

PhyloTree.org - human mtDNA tree: phylogeny, haplotree, haplogroups,mutations, RSRS, rCRS

Please cite the mtDNA tree as follows:. Van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 30(2):E386-E394. http:/ www.phylotree.org. MtDNA tree Build 17 (18 Feb 2016). RCRS-oriented version of Build 17. Previous Builds of the mtDNA tree. Database of 24,275 entire mtDNA sequences considered for tree construction. The revised Cambridge Reference Sequence (rCRS), annotated. The Reconstructed Sapiens Reference Sequence (RSRS), annotated.

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PhyloTree.org - human mtDNA tree: phylogeny, haplotree, haplogroups,mutations, RSRS, rCRS | phylotree.org Reviews

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Please cite the mtDNA tree as follows:. Van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 30(2):E386-E394. http:/ www.phylotree.org. MtDNA tree Build 17 (18 Feb 2016). RCRS-oriented version of Build 17. Previous Builds of the mtDNA tree. Database of 24,275 entire mtDNA sequences considered for tree construction. The revised Cambridge Reference Sequence (rCRS), annotated. The Reconstructed Sapiens Reference Sequence (RSRS), annotated.

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PhyloTree.org - human mtDNA tree: phylogeny, haplotree, haplogroups,mutations, RSRS, rCRS | phylotree.org Reviews

https://phylotree.org

Please cite the mtDNA tree as follows:. Van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 30(2):E386-E394. http:/ www.phylotree.org. MtDNA tree Build 17 (18 Feb 2016). RCRS-oriented version of Build 17. Previous Builds of the mtDNA tree. Database of 24,275 entire mtDNA sequences considered for tree construction. The revised Cambridge Reference Sequence (rCRS), annotated. The Reconstructed Sapiens Reference Sequence (RSRS), annotated.

INTERNAL PAGES

phylotree.org

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PhyloTree.org | RSRS annotated

http://www.phylotree.org/resources/RSRS_annotated.htm

This is the Reconstructed Sapiens Reference Sequence (RSRS). Behar et al. 2012. Annotated with its genes (rRNA, tRNA, and protein-coding), codon-to-amino acid translations, and other features. Download the RSRS in FASTA. Format (positions 523, 524 and 3107 are filled with "N" to preserve nucleotide position numbering). You can also view a graphical representation. Of the mtDNA genomic organization. Control-region positions are shown in blue. Used on this page. G Control region 2. A Control region 3.

2

PhyloTree.org | rCRS annotated

http://www.phylotree.org/resources/rCRS_annotated.htm

This is the revised Cambridge Reference Sequence (rCRS). Andrews et al. 1999. Annotated with its genes (rRNA, tRNA, and protein-coding), codon-to-amino acid translations, and other features. Download the rCRS in FASTA. Format (position 3107 is filled with "N" to preserve nucleotide position numbering). You can also view a graphical representation. Of the mtDNA genomic organization. Control-region positions are shown in blue. While coding-region positions are shown in black, consistent with the mtDNA tree.

3

PhyloTree.org | version history

http://www.phylotree.org/previous_builds.htm

We recommend using the most recent version of the mtDNA tree. For the historical record, previous Builds remain available for download here. MtDNA tree Build 16 (19 Feb 2014). MtDNA tree Build 15 (30 Sep 2012). MtDNA tree Build 14 (5 Apr 2012). MtDNA tree Build 13 (28 Dec 2011). MtDNA tree Build 12 (20 Jul 2011). MtDNA tree Build 11 (7 Feb 2011). MtDNA tree Build 10 (10 Aug 2010). MtDNA tree Build 9 (20 Jun 2010). MtDNA tree Build 8 (21 Mar 2010). MtDNA tree Build 7 (10 Nov 2009).

4

PhyloTree.org | mtDNA of human relatives

http://www.phylotree.org/resources/mtDNA_human_relatives.htm

Maximum parsimony tree based on an alignment of entire mtDNA sequences. Neanderthal (Vindija 33.16).

5

PhyloTree Y - Minimal Y tree

http://www.phylotree.org/Y/tree/index.htm

Minimal reference phylogeny for the human Y chromosome. Citation: van Oven M, Van Geystelen A, Kayser M, Decorte R, Larmuseau MH. 2014. Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome. Hum Mutat 35(2):187-191. Full Y-SNP list with marker details. Central Africa, West Africa. West Africa, North Africa. Southern Africa, Central Africa. East Africa, Southern Africa. Central Africa, Southern Africa, East Africa. Africa, West Asia, Southern Europe. Europe, West Asia.

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ncbi.nlm.nih.gov

Carriers of Mitochondrial DNA Macrohaplogroup N Lineages Reached Australia around 50,000 Years Ago following a Northern Asian Route

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460043

Skip to main content. Sign in to NCBI. US National Library of Medicine. National Institutes of Health. 2015; 10(6): e0129839. Published online 2015 Jun 8. Doi: 10.1371/journal.pone.0129839. Carriers of Mitochondrial DNA Macrohaplogroup N Lineages Reached Australia around 50,000 Years Ago following a Northern Asian Route. Jose M. Larruga. Khaled K. Abu-Amero. And Ana M. González. Francesc Calafell, Academic Editor. Department of Ophthalmology, College of Medicine, King Saud University, Riyadh, Saudi Arabia.

mseqdr.org

MSeqDR tools for mitochondrial diseases

https://mseqdr.org/mitobox.php

A,rs113994099, 1:12031905.12081904, POLG, ENSG00000162572, MT-ND1, RCV000000015.1, Myopathy, MELAS. Single entry only! Variant: C" 1:g.10042757T C. Mitochondrial Genomic Tools and Databases. MSeqDR is Collaborating with the Community to Bring Together Established Tools. Phenome Portal: Mitochondrial Diseases, Phenotypes, Tools and Databases. All MSeqDR data linked to the disease in a single place. Browse and traversing human phenotype ontology tree. Mitochondrial DNA and nuclear DNA Variant Tools:. MvToo...

mseqdr.org

MSeqDR and Genomic Discovery in Mitochondrial Disease News and Progress

https://mseqdr.org/news.php

A,rs113994099, 1:12031905.12081904, POLG, ENSG00000162572, MT-ND1, RCV000000015.1, Myopathy, MELAS. Single entry only! Variant: C" 1:g.10042757T C. MSeqDR News and Progress in Genomic Discovery in Mitochondrial Disease. MSeqDR: A Centralized Knowledge Repository and Bioinformatics Web Resource to Facilitate Genomic Investigations in Mitochondrial Disease Hum Mutat. 2016 Jun;37(6):540-8. doi: 10.1002/humu.22974. Epub 2016 Mar 21. COMMENTARY: From case studies to community knowledge base: MSeqDR. Find out ...

mseqdr.org

MToolBox Pipeline @ MSeqDR

https://mseqdr.org/mtoolbox.php

A,rs113994099, 1:12031905.12081904, POLG, ENSG00000162572, MT-ND1, RCV000000015.1, Myopathy, MELAS. Single entry only! Variant: C" 1:g.10042757T C. MToolBox Pipeline @ MSeqDR. Option 1: Copy and Paste Your FASTA Input Here. Option 2: Upload Input File. Drag and Drop fasta (single sequence fasta only), fastq, fastq.gz, bam, sam file here, file size up to 50MB. Check Samples to Analyze:. 1 2016-08-26-02-50-2467 input.fasta. 2 data88.sorted.bam. 5 2016-08-13-21-19-6985 input.fasta. 10,217.2 KB. 300,630....

mseqdr.org

MSeqDR/GEM.app Tutorial at UMDF Mitochondrial Medicine 2015

https://mseqdr.org/umdf15.php

A,rs113994099, 1:12031905.12081904, POLG, ENSG00000162572, MT-ND1, RCV000000015.1, Myopathy, MELAS. Single entry only! Variant: C" 1:g.10042757T C. MSeqDR/GEM.app Tutorial at UMDF Mitochondrial Medicine 2015. Over 50 clinicians, scientists and genetic counselors, from over worldwide institutes and hospitals, attended the workshop. Please send us your comments by filling out the Online Survey. Thank you for your time and participation! The MSeqDR-GEM.app-GeneMatcher team.

mseqdr.org

MSeqDR Tutorials and Examples

https://mseqdr.org/tutorial.php

A,rs113994099, 1:12031905.12081904, POLG, ENSG00000162572, MT-ND1, RCV000000015.1, Myopathy, MELAS. Single entry only! Variant: C" 1:g.10042757T C. MSeqDR Tutorials and Examples. The first paper describing the MSeqDR Project is accepted for publication: Pubmed 25542617. Mol Genet Metab. 2014 Dec 4. pii: S1096-7192(14)00377-1. doi: 10.1016/j.ymgme.2014.11.016. Introduction to using MSeqDR: swf. Format. Tutorial was prepared by Dr. Marni Falk, 20 min. Hands-on exercises and walk throughs. About the webpage...

haplogrep.uibk.ac.at

mtDNA-KnowledgeBase | Analyzing the human mitochondrial genome

http://haplogrep.uibk.ac.at/blog

HaploGrep2 Update 2.1.0. August 10, 2016. August 10, 2016. We just updated HaploGrep2, with the following minor points:. The Export of the Extended Report (Export / Haplogroup Extendet (txt) got extended with the “Found Polys” – see Describtion below:. The Report for the potential Phantom Mutations got corrected, so that positions with bases according the rCRS reference are not listed anymore. Report of the possible Recombinations based now on Hamming Distance instead of Kulczynksi-Distance. 8211; Varian...

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phylotree.org

PhyloTree.org - human mtDNA tree: phylogeny, haplotree, haplogroups,mutations, RSRS, rCRS

Please cite the mtDNA tree as follows:. Van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 30(2):E386-E394. http:/ www.phylotree.org. MtDNA tree Build 17 (18 Feb 2016). RCRS-oriented version of Build 17. Previous Builds of the mtDNA tree. Database of 24,275 entire mtDNA sequences considered for tree construction. The revised Cambridge Reference Sequence (rCRS), annotated. The Reconstructed Sapiens Reference Sequence (RSRS), annotated.

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