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Phytocomp - new computing tools for plant science | Phytocomp - new computing tools for plant science | The James Hutton Institute

James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. Phytocomp - new computing tools for plant science. We are a group of collaborators from the School of Computing and Division of Civil Engineering at the University of Dundee, the Department of Plant Sciences at the University of Cambridge, and the Ecological Sciences Group at the James Hutton Institute in Dundee. Who we are: Stephen McKenna. PlantVis - 2D tracking. PlantVis - 3D tracking.

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Phytocomp - new computing tools for plant science | Phytocomp - new computing tools for plant science | The James Hutton Institute | phytocomp.org.uk Reviews

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James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. Phytocomp - new computing tools for plant science. We are a group of collaborators from the School of Computing and Division of Civil Engineering at the University of Dundee, the Department of Plant Sciences at the University of Cambridge, and the Ecological Sciences Group at the James Hutton Institute in Dundee. Who we are: Stephen McKenna. PlantVis - 2D tracking. PlantVis - 3D tracking.

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Phytocomp - new computing tools for plant science | Phytocomp - new computing tools for plant science | The James Hutton Institute | phytocomp.org.uk Reviews

https://phytocomp.org.uk

James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. Phytocomp - new computing tools for plant science. We are a group of collaborators from the School of Computing and Division of Civil Engineering at the University of Dundee, the Department of Plant Sciences at the University of Cambridge, and the Ecological Sciences Group at the James Hutton Institute in Dundee. Who we are: Stephen McKenna. PlantVis - 2D tracking. PlantVis - 3D tracking.

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phytocomp.org.uk

1

Phytocomp - new computing tools for plant science | Phytocomp - new computing tools for plant science | The James Hutton Institute

http://www.phytocomp.org.uk/node/8/print

James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. Phytocomp - new computing tools for plant science. We are a group of collaborators from the School of Computing and Division of Civil Engineering at the University of Dundee, the Department of Plant Sciences at the University of Cambridge, and the Ecological Sciences Group at the James Hutton Institute in Dundee. Who we are: Stephen McKenna. PlantVis - 2D tracking. PlantVis - 3D tracking.

2

Site map | Phytocomp - new computing tools for plant science | The James Hutton Institute

http://www.phytocomp.org.uk/sitemap

James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. Below is a list of each page on the Phytocomp website, separated into relevant areas. If you cannot find what you are looking for, please use the search facility here. PlantVis - 2D tracking. PlantVis - 3D tracking. 2016 The James Hutton Institute. To read our Terms and Conditions and Legal Disclaimer.

3

PlantVis - 2D tracking | Phytocomp - new computing tools for plant science | The James Hutton Institute

http://www.phytocomp.org.uk/plantvis2D

James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. PlantVis - 2D tracking. This software is designed to estimate the motion of patches of pixels obtained in fluorescence images from a Confocal Laser Microscope. Displacements are reported to 0.1 pixel resolution, and the confidence of these estimates is also reported. Velocity in particular root tissues, [as highlighted in image];. For more information, please contact Stephen McKenna.

4

PlantVis - 3D tracking | Phytocomp - new computing tools for plant science | The James Hutton Institute

http://www.phytocomp.org.uk/3d

James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. PlantVis - 3D tracking. We have developed prototype software for cell segmentation and tracking of dual labelled Arabidopsis roots (nuclear and plasma-membrane markers) in 4-D. Nuclei are tracked located and tracked in 3-D versus time. Cell vertices are identified and used to reconstruct cell networks, which are then tracked with time. Software run from ImageJ. PlantVis - 2D tracking.

5

Cell Modeller | Phytocomp - new computing tools for plant science | The James Hutton Institute

http://www.phytocomp.org.uk/cellmodeller

James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. Application example: simulating branch outgrowth. Different types of cells organised in tissues can generate complex patterns of stress and deformation in tissues. Here, a group of internal cells have a higher expansion rate, and induce the formation of an outgrowing branch. Cell modeller has its own website. PlantVis - 2D tracking. PlantVis - 3D tracking. Last updated on 09 Sep 2013.

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Phytocomp - new computing tools for plant science | Phytocomp - new computing tools for plant science | The James Hutton Institute

James Hutton Institute Partner Websites. ASIS - Arable Seed Identifcation System. Scottish Society for Crop Research. Phytocomp - new computing tools for plant science. We are a group of collaborators from the School of Computing and Division of Civil Engineering at the University of Dundee, the Department of Plant Sciences at the University of Cambridge, and the Ecological Sciences Group at the James Hutton Institute in Dundee. Who we are: Stephen McKenna. PlantVis - 2D tracking. PlantVis - 3D tracking.

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