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phytomorph.wisc.edu

Welcome — Phytomorph

Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. Welcome to the home page of Phytomorph. We are a project funded by the NSF. Plant Genome Research Program. Dedicated to developing technologies to quantify plant development through the application of machine vision, image acquisition, high throughput computing, and data analysis. (. For feedback, questions, or accessibility issues, please contact Edgar Spalding.

http://phytomorph.wisc.edu/

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Welcome — Phytomorph | phytomorph.wisc.edu Reviews
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Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. Welcome to the home page of Phytomorph. We are a project funded by the NSF. Plant Genome Research Program. Dedicated to developing technologies to quantify plant development through the application of machine vision, image acquisition, high throughput computing, and data analysis. (. For feedback, questions, or accessibility issues, please contact Edgar Spalding.
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1 phytomorph
2 project overview
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6 miron livny
7 the condor team
8 edgar spalding pi
9 nicola ferrier copi
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Welcome — Phytomorph | phytomorph.wisc.edu Reviews

https://phytomorph.wisc.edu

Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. Welcome to the home page of Phytomorph. We are a project funded by the NSF. Plant Genome Research Program. Dedicated to developing technologies to quantify plant development through the application of machine vision, image acquisition, high throughput computing, and data analysis. (. For feedback, questions, or accessibility issues, please contact Edgar Spalding.

INTERNAL PAGES

phytomorph.wisc.edu phytomorph.wisc.edu
1

Welcome — Phytomorph

http://phytomorph.wisc.edu/index.php

Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. Welcome to the home page of Phytomorph. We are a project funded by the NSF. Plant Genome Research Program. Dedicated to developing technologies to quantify plant development through the application of machine vision, image acquisition, high throughput computing, and data analysis. (. For feedback, questions, or accessibility issues, please contact Edgar Spalding.

2

Gravitropism Results — Phytomorph

http://phytomorph.wisc.edu/results/gravitropism.php

Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. The image below shows a root immediately after rotation and after six hours of gravitropism. Images acquired every two minutes during the process provide detailed information about the progression of this hormonally-mediated response to a physical aspect of the environment. You may watch a movie of the entire ten hour experiment. Maize, and tomato. Miller ND, Durham Brooks TL, Assadi AH, Spalding EP. Separating the ...

3

Seed Size, Morphology, and Color — Phytomorph

http://phytomorph.wisc.edu/results/seed-size.php

Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. Seed Size, Morphology, and Color. The process of quantifying seed size and shape begins with the digital imaging of groups of approximately 1000 seeds with a standard flatbed scanner using the grayscale setting at 3200 dpi. Moore CR, Gronwall DS, Miller ND, Spalding EP. Mapping quantitative trait loci affecting Arabidopsis thaliana. Seed morphology features extracted computationally from images. Plasticity of Arabid...

4

Robotic Camera — Phytomorph

http://phytomorph.wisc.edu/hardware/robot.php

Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. The following image gallery includes a sketch of the gantry robotic positioning device custom-built by Intellidrives. To control the positioning of the CCD camera, along with photos of Ram and Logan assembling the 2300 lb apparatus, which took a team to raise. You may also watch the robot in action. The linear servo slides. Subramanian R, Spalding EP, Ferrier NJ. Machine Vision and Applications.

5

Grid Sample Fixture — Phytomorph

http://phytomorph.wisc.edu/hardware/fixture.php

Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. For feedback, questions, or accessibility issues, please contact Edgar Spalding.

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LINKS TO THIS WEBSITE

plant-image-analysis.org plant-image-analysis.org

Plant Image Analysis - Related websites

http://www.plant-image-analysis.org/related

Links of general interest for anyone doing plant image analysis. Wiki site about ImageJ. Fiji is an image processing package. It can be described as a distribution of ImageJ (and soon ImageJ2) together with Java, Java 3D and a lot of plugins organized into a coherent menu structure. Fiji compares to ImageJ as Ubuntu compares to Linux. Links to research groups of special interest, mainly because they host several plant image analysis softwares. Center for Plant Integrative Biology. The Center for Plant In...

phenomics.cn phenomics.cn

Useful links - Phenomics.cn

http://www.phenomics.cn/links.php

International Plant Phenomics Network. IPPN is an international consortium that will boost plant phenotyping science by developing novel technologies and concepts used for the application of plant production and the analysis of ecosystem performance. German Plant Phenotyping Network. DPPN is a Germany funded project that partners undertake a joint research program and share their phenotyping infrastructure within networking activities. PHEOME, launched in 2012, is a project funded by French investment fo...

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Welcome — Phytomorph

Tessa Durham Brooks (coPI). A Mark Settles (coPI). Original Data Supporting Publications. Welcome to the home page of Phytomorph. We are a project funded by the NSF. Plant Genome Research Program. Dedicated to developing technologies to quantify plant development through the application of machine vision, image acquisition, high throughput computing, and data analysis. (. For feedback, questions, or accessibility issues, please contact Edgar Spalding.

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