PIGEST.KU.DK

PigEST

The PigEST resource v. 1.0 at LIFE. The accompaying PigEST paper has been published in Genome Biology. This resource contain a large collection of porcine EST sequences. An assembly of the sequences can be accessed dynamically through an SQL interface. In addition a static data, such as BLAST. And expression data extracted from 97 non-normalized cDNA libraries. See more details in the introduction. This webpage is hosted by the Division of Genetics and Bioinformatics, IBHV.

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PigEST | pigest.ku.dk Reviews

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The PigEST resource v. 1.0 at LIFE. The accompaying PigEST paper has been published in Genome Biology. This resource contain a large collection of porcine EST sequences. An assembly of the sequences can be accessed dynamically through an SQL interface. In addition a static data, such as BLAST. And expression data extracted from 97 non-normalized cDNA libraries. See more details in the introduction. This webpage is hosted by the Division of Genetics and Bioinformatics, IBHV.

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1 news

2 introduction

3 server

4 downloads

5 links

6 piggenome dk

7 piggenome org

8 more news here

9 the resource

10 short background

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PigEST | pigest.ku.dk Reviews

https://pigest.ku.dk

The PigEST resource v. 1.0 at LIFE. The accompaying PigEST paper has been published in Genome Biology. This resource contain a large collection of porcine EST sequences. An assembly of the sequences can be accessed dynamically through an SQL interface. In addition a static data, such as BLAST. And expression data extracted from 97 non-normalized cDNA libraries. See more details in the introduction. This webpage is hosted by the Division of Genetics and Bioinformatics, IBHV.

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pigest.ku.dk

1

PigEST

http://pigest.ku.dk/notes/introduction.html

To conduct Gene Ontology analysis we matched the consensus and singleton sequences against UniProt. This comparison is available in the static download section. When entering the distiller database a comparison to nr will be available, as nr is the only protein database integrated into distiller at the moment. In a few instances sequences are not match against UniProt, but nr only (due to more conservative criteria in entering the UniProt database). More details about the work can be found in:.

2

PigEST

http://pigest.ku.dk/download/index.html

You can download the following static compilations listed below. PigEST (version 1.0) static data. README static pigest 1.0.1.html. House keeping gene candidates. CDNA specific gene candidates. CDNA spec genes.html. Gene lib profiles thres 2.clean.tbl.gz. NcRNA candidates M0 M1 clean.fasta. Cluster seqs.fasta.gz. Singleton seqs.fasta.gz. Pub EST sequences (398837, Feb 17, 2005). EST sequences pub.fasta.gz. SD EST sequences (raw: 823871). EST sequences SD raw.fasta.gz. BLAST data part 0 (Huge).

3

PigEST

http://pigest.ku.dk/notes/news.html

The accompaying PigEST paper has been published in Genome Biology. Home page lunched. The KVL PigEST resource v. 1.0 contains assembly of more than 1 million EST sequences. Access the server here. Comments, questions, etc., email webmaster@pigest.ku.dk. Last updated May 11th, 2007 by Jan Gorodkin.

4

PigEST

http://pigest.ku.dk/server/index.html

To access the Distiller database of the assembly. You can enter each assembly obtain detailed information, such as alternative splice variants, indication of SNPs as well as search facilities. Server no longer available]. For usage of the data please cite:. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. J Gorodkin et al., Genome Biology 8:R45, 2007. Comments, questions, etc., email webmaster@pigest.ku.dk.

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piggenome.dk

The Sino-Danish Pig Genome Project

http://www.piggenome.dk/sg.html

The Sino-Danish Pig Genome Project. Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing. Rasmus Wernersson, Mikkel H Schierup, Frank G Jorgensen, Jan Gorodkin, Frank Panitz, Hans-Henrik Staerfeldt, Ole F Christensen, Thomas Mailund, Henrik Hornshoj, Ami Klein, Jun Wang, Bin Liu, Songnian Hu, Wei Dong, Wei Li, Gane K-S Wong, Jun Yu, Jian Wang, Christian Bendixen, Merete Fredholm, Soren Brunak, Huanming Yang, Lars Bolund. BMC Genomics 2005, 6:70 (10 May 2005). Pigdb genom...

piggenome.dk

The Sino-Danish Pig Genome Project

http://www.piggenome.dk/links.html

The Sino-Danish Pig Genome Project. Miscellaneous pig genome related links:. The collection at piggenome.org. Comments, questions, etc., email webmaster@piggenome.dk. Last updated March 27th, 2007 by Jan Gorodkin.

piggenome.dk

The Sino-Danish Pig Genome Project

http://www.piggenome.dk/est.html

The Sino-Danish Pig Genome Project. The EST sequences was been uploaded to the NCBI trace archive and can be found searching under the center name 'SDJVP' within the dates July 15, 2006 and July 31, 2006. See also http:/ pigest.ku.dk. Comments, questions, etc., email webmaster@piggenome.dk. Last updated March 27th, 2007 by Jan Gorodkin.

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[ PtEST -- Pig testis Expressed Sequence Tags database ]

Pig testis Expressed Sequence Tags (PtEST) database. Is the collection of ESTs exclusive from the testis of purebred Duroc testis. The main goal of PtEST database is to serve with annotated ESTs for the study on boar fertility, one of the most important traits for economic animals. Pig testis Expressed Sequence Tags database. Is organized into these subject databases:. Expession Sequence Tag (EST) Database. Sep 22, 2006. PtEST has been updated. Sep 22, 2006. Protein Domain Families and Motifs.

pigest.ku.dk

PigEST

The PigEST resource v. 1.0 at LIFE. The accompaying PigEST paper has been published in Genome Biology. This resource contain a large collection of porcine EST sequences. An assembly of the sequences can be accessed dynamically through an SQL interface. In addition a static data, such as BLAST. And expression data extracted from 97 non-normalized cDNA libraries. See more details in the introduction. This webpage is hosted by the Division of Genetics and Bioinformatics, IBHV.

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