pipe.sc.fsu.edu
PI2PE: Protein Interface/Interior Prediction EnginePI2PE: Protein Interface/Interior Prediction Engine
http://pipe.sc.fsu.edu/
PI2PE: Protein Interface/Interior Prediction Engine
http://pipe.sc.fsu.edu/
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PI2PE: Protein Interface/Interior Prediction Engine | pipe.sc.fsu.edu Reviews
https://pipe.sc.fsu.edu
PI2PE: Protein Interface/Interior Prediction Engine
pipe.sc.fsu.edu
cons-PPISP: Protein Protein Interaction Site Prediction
http://pipe.sc.fsu.edu/ppisp
Method at a Glance. Chen, H-L and Zhou, H-X. Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data. Proteins 61:21-35 (2005). Zhou, H.-X. and Shan, Y. Prediction of protein interaction sites from sequence profiles and residue neighbor list. Proteins 44:336-343 (2001). Note: The size of protein can be submitted here is from 40 to 2000 residues. Predict binding site for your protein here. Enter an email address.
meta-PPISP: Meta Web Server for Protein Protein Interaction Site Prediction
http://pipe.sc.fsu.edu/meta-ppisp
Method at a Glance. Meta-PPISP is built on three individual web servers: cons-PPISP. Qin, S.B. and Zhou, H.-X. meta-PPISP: a meta web server for protein-protein interaction site prediction, Bioinformatics 23, 3386-3387(2007). Predict binding site for your protein here. If you have more than a few proteins and would like to run meta-PPISP in batch mode, click here. Type an arbitrary name for referencing your submission. Enter an email address. No chain ID: leave underscore " " alone.
TransComp: Web Server for Predicting Protein Association Rate Constants
http://pipe.sc.fsu.edu/transcomp
Method at a Glance. TransComp implements the transient-complex theory for predicting protein-protein and protein-RNA association rate constants. During association, two subunits first approach each other via diffusion to form a transient complex, in which they have near-native separation and relative orientation but have yet to form the specific short-range interactions of the native complex. From there conformational rearrangement leads to the native complex. The theory predicts the associat...The input...
PI
http://pipe.sc.fsu.edu/milis.php
PE: Protein Interface/Interior Prediction Engine. We invite you to join the PI. PE mailing list. We will use the list to announce updates and bug fixes. If you have comment, please type it here:. Enter the result of 1 x 8. School of Computational Science Institute of Molecular Biology Department of Physics. Florida State University, Tallahassee, FL 32306. Phone: (850) 645-1336 Email:.
DISPLAR: DNA-Interaction Site Prediction from a List of Adjacent Residues
http://pipe.sc.fsu.edu/displar
Method at a Glance. Tjong , H. and Zhou, H.-X. DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces. Nucl. Acids Res. 35:1465-1477 (2007). Note: The size of protein can be submitted here is from 40 to 2000 residues. Predict DNA-binding site for your protein here. If you have more than a few proteins and would like to run DISPLAR in batch mode, click here. Type an arbitrary name for referencing your submission. Enter an email address. Do not include chains for DNA):.
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WESA: Weighted Ensemble Solvent Accessibility
http://pipe.scs.fsu.edu/wesa
Method at a Glance. Chen, H-L and Zhou, H-X. Prediction of solvent accessibility and sites of deleterious mutations from protein sequence. Nucl. Acids Res. 33, 3193-3199 (2005). Shan, Y., Wang, G., and Zhou, H.-X. Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading. Proteins 42, 23-37 (2001). Note: The length of sequence can be submitted here is limited to 2000 amino acids. Enter the sequence of your protein to get predicted solvent accessibility.
cons-PPISP: Protein Protein Interaction Site Prediction
http://pipe.scs.fsu.edu/ppisp
Method at a Glance. Chen, H-L and Zhou, H-X. Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data. Proteins 61:21-35 (2005). Zhou, H.-X. and Shan, Y. Prediction of protein interaction sites from sequence profiles and residue neighbor list. Proteins 44:336-343 (2001). Note: The size of protein can be submitted here is from 40 to 2000 residues. Predict binding site for your protein here. Enter an email address.
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PI2PE: Protein Interface/Interior Prediction Engine
Since Jan 11, 2007. PE consists of five predictors, developed by the Zhou group at FSU. Three of the predictors are based on position-specific sequence profiles, which are generated by running PSI-blast (blast release 2.2.13. On the non-redundant protein sequence database ( nr. 3,625,149 entries; May 2006 release). Click a flag below to access the predictor. Please cite:. Tjong, H. Qin, S.B. and Zhou, H.-X. (2007) PI. For using the web servers and cite papers listed under these servers for methods. Is bu...
PI2PE: Protein Interface/Interior Prediction Engine
Since Jan 11, 2007. PE consists of five predictors, developed by the Zhou group at FSU. Three of the predictors are based on position-specific sequence profiles, which are generated by running PSI-blast (blast release 2.2.13. On the non-redundant protein sequence database ( nr. 3,625,149 entries; May 2006 release). Click a flag below to access the predictor. Please cite:. Tjong, H. Qin, S.B. and Zhou, H.-X. (2007) PI. For using the web servers and cite papers listed under these servers for methods. Is bu...
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