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pipeline.lbl.gov

VISTA Gateway

Tools for comparative genomics

http://pipeline.lbl.gov/

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VISTA Gateway | pipeline.lbl.gov Reviews
<META>
DESCRIPTION
Tools for comparative genomics
<META>
KEYWORDS
1 genome
2 genome browser
3 VISTA
4 GenomeVISTA
5 gVISTA
6 LBNL
7 bioinformatics
8 whole-genome alignment
9 comparative genomics
10
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about us,cite us,vista home,custom alignment,browser,enhancer db,downloads,publications,clade,genome,release,position,vertebrate,insect,nematode,deuterostome,plant,fungus,alga,annelid,stramenopile,other metazoa,human,mouse,fugu,chimpanzee,chicken,frog
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VISTA Gateway | pipeline.lbl.gov Reviews

https://pipeline.lbl.gov

Tools for comparative genomics

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pipeline.lbl.gov pipeline.lbl.gov
1

VISTA Browser Methods

http://pipeline.lbl.gov/methods.shtml

Tools for Comparative Genomics. How the genomes were aligned. Which allows user-submitted sequences to be aligned and compared against whole genome assemblies (base genomes). There are three schemes of data presentation on the whole genome scale available for the user - the VISTA Browser. On the mirrored UCSC genome browser, and the VISTA Point. You will find Help pages here. Brudno M, Malde S, Poliakov A, Do CB, Couronne O, Dubchak I, Batzoglou S; Glocal alignment: finding rearrangements during alignmen...

2

Vista Browser 2 Help

http://pipeline.lbl.gov/help.shtml

Tools for Comparative Genomics. Java 2 Installation instructions. 1997-2013 The Regents of the University of California.

3

Vista Browser 2 Help

http://pipeline.lbl.gov/vgb2help.shtml

Tools for Comparative Genomics. VISTA Browser requires Java 1.2. Or better. If you experience problems such as a gray screen with no browser, an empty window, etc. you need to install Java. Please follow the instructions below. To install it. If you have any problems with the installation process or with the browser, and they are not addressed in these help pages, please contact us at vista@lbl.gov. We welcome all feedback. Peaks and Valleys, Annotation, Colored Regions, Contigs). Changing the base genome.

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bdgp.org bdgp.org

BDGP: BDGP News Archive

http://www.bdgp.org/about/news/index.html

Berkeley Drosophila Genome Project. Contact Information, News, Citing BDGP. Clones, Vectors, Stocks, Libraries. SEP-15-09 Illumina RNA-Seq data from 30 developmental time points of. Has been submitted to the Short Read Archive at NCBI as part of the modENCODE project. The data set. Currently contains 2.2 billion single-end and paired reads and over 201 billion base pairs. MAR-30-04 A new release of embryonic expression patterns. Including over 5000 genes (2000 more than the last release) is now available.

lilab.uchc.edu lilab.uchc.edu

Resources - The Li Laboratory at UConn Health Center

http://lilab.uchc.edu/resources/index.html

Open reading frame finding. Genomic DNA and cDNA alignment to find exon sequene. Genome browser for different organisms, including human, mouse, rat, chick, fly, zebrafish and more. Catalogue of known genes. Genome browser, annotation of novel genes based on similarity to known gene, and EST. Promoter prediction, Eukaryotic Promoter Database at EMBL, Heidelberg. Neural Network Promoter Prediction. Alignment of two given sequences. BAC Clone ordering, information of RP-BAC vector information.

fruitfly.org fruitfly.org

BDGP: BDGP News Archive

http://www.fruitfly.org/about/news/index.html

Berkeley Drosophila Genome Project. Contact Information, News, Citing BDGP. Clones, Vectors, Stocks, Libraries. SEP-15-09 Illumina RNA-Seq data from 30 developmental time points of. Has been submitted to the Short Read Archive at NCBI as part of the modENCODE project. The data set. Currently contains 2.2 billion single-end and paired reads and over 201 billion base pairs. MAR-30-04 A new release of embryonic expression patterns. Including over 5000 genes (2000 more than the last release) is now available.

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VISTA Gateway

Tools for Comparative Genomics. VISTA Browser (Requires Java2). Whole Genome Comparative Analysis of the Human Feb. 2009. From this page you can access the results of:. Human Feb. 2009. Chimp Mar. 2006. Callithrix jacchus v.2.0.2. Rhesus Jan. 2006. And Pongo pygmaeus abelii v.2.0.2. The pairwise alignments of the. Human Feb. 2009. Genome produced by the Genome Reference Consortium. With the following genomes:. The Mouse Jul. 2007. Genome produced by the Mouse Genome Sequencing Consortium.

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Pipeline

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