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PIPSA - compare electrostatic interaction properties

This PIPSA service is provided for the comparison of the electrostatic interaction properties of proteins. It permits the classification of proteins according to their interaction properties. PIPSA may assist in function assignment, the estimation of binding properties and enzyme kinetic parameters. See References. PIPSA analysis (input PDB format coordinate files). PIPSA analysis (input SWISSPROT entries with EC annotation). Therefore this part is subject to the Modeller license conditions.

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PIPSA - compare electrostatic interaction properties | pipsa.eml.org Reviews

<META> DESCRIPTION

This PIPSA service is provided for the comparison of the electrostatic interaction properties of proteins. It permits the classification of proteins according to their interaction properties. PIPSA may assist in function assignment, the estimation of binding properties and enzyme kinetic parameters. See References. PIPSA analysis (input PDB format coordinate files). PIPSA analysis (input SWISSPROT entries with EC annotation). Therefore this part is subject to the Modeller license conditions.

<META> KEYWORDS

1 webpipsa

2 rotein i

3 nteraction p

4 roperty s

5 imilarity a

6 nalysis

7 run pipsa

8 documentation

9 demonstration

10 download pipsa

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PIPSA - compare electrostatic interaction properties | pipsa.eml.org Reviews

https://pipsa.eml.org

This PIPSA service is provided for the comparison of the electrostatic interaction properties of proteins. It permits the classification of proteins according to their interaction properties. PIPSA may assist in function assignment, the estimation of binding properties and enzyme kinetic parameters. See References. PIPSA analysis (input PDB format coordinate files). PIPSA analysis (input SWISSPROT entries with EC annotation). Therefore this part is subject to the Modeller license conditions.

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pipsa.eml.org

1

PIPSA - compare electrostatic interaction properties

http://pipsa.eml.org/pipsa/manualPipsa.jsp

PIPSA analysis with input of protein structures in PDB or PQR format. Enter the file names of the coordinates of the proteins to be analyzed. The pdb files can be selected either from your local disk (left panel) or by entering pdb identifiers (e.g. 1hti 1dkw 1b9b 1ci1 1i45 1tim, right panel). The selected pdb files/entries will be shown in a list and can be removed if necessary. For further information about the algorithm. Select local PDB/PQR files. Specify PDB IDs from the RCSB. Files names will be cut.

2

PIPSA - compare electrostatic interaction properties

http://pipsa.eml.org/pipsa/pipsa-imprint.jsp

For data protection information use the imprint of HITS gGmbH available via this link. The main authors of PIPSA, the corresponding workflows, the examples and the webserver version are Razif Gabdoulline, Matthias Stein, Anne Wenzel, Stefan Richter and Rebecca Wade. You may find individual addresses for contact at http:/ www.h-its.org. The terms and conditions for use of the downloadable version of PIPSA can be found here. Please follow this link to the webserver terms and conditions.

3

PIPSA - compare electrostatic interaction properties

http://pipsa.eml.org/pipsa/parameterCalculation.jsp

QPIPSA Parameter Retrieval and Estimation Module. What this module does? Retrieval of relevant parameters and associated information from BRENDA. As well as protein sequences from UNIPROT. And protein structures from PDB. Parameter estimation using available protein structure information. Currently the PIPSA. A list of CHANGES can be found here. For more information on the use of this module click here. Retrieval of parameters and related information. Eg P35557 or P35520:4.2.1.22) [? ProFAT is a tool for...

4

PIPSA - compare electrostatic interaction properties

http://pipsa.eml.org/pipsa/manually.do

PIPSA analysis with input of protein structures in PDB or PQR format. Enter the file names of the coordinates of the proteins to be analyzed. The pdb files can be selected either from your local disk (left panel) or by entering pdb identifiers (e.g. 1hti 1dkw 1b9b 1ci1 1i45 1tim, right panel). The selected pdb files/entries will be shown in a list and can be removed if necessary. For further information about the algorithm. Select local PDB/PQR files. Specify PDB IDs from the RCSB. Files names will be cut.

5

PIPSA - compare electrostatic interaction properties

http://pipsa.eml.org/pipsa/pipsa-example.jsp

This demonstration consists of two demonstrations:. Running a standard PIPSA example ( see below. Relating kinetic parameters to PIPSA results ( see here. Example of running webPIPSA with several protein structure templates to account for conformational variability ( click here. QPIPSA: Relating enzymatic kinetic parameters and interaction fields. Razif R Gabdoulline, Matthias Stein and Rebecca C Wade BMC Bioinformatics 2007, 8:373 ( fulltext. Download and unpack the zipped protein structures. The distan...

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PIPSA - compare electrostatic interaction properties

This PIPSA service is provided for the comparison of the electrostatic interaction properties of proteins. It permits the classification of proteins according to their interaction properties. PIPSA may assist in function assignment, the estimation of binding properties and enzyme kinetic parameters. See References. PIPSA analysis (input PDB format coordinate files). PIPSA analysis (input SWISSPROT entries with EC annotation). Therefore this part is subject to the Modeller license conditions.

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PIPSA - compare electrostatic interaction properties

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