PLANTGENIE.ORG

PlantGenIE

The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualizing and analyzing genomics and transcriptomics data for different plant species. Currently it includes dedicated web portals for enabling in-depth exploration of poplar, Norway spruce, and Arabidopsis. The PlantGenIE platform uses Chado databases and is based on the GenIE CMS (Content Management System). Select Arabidopsis, Poplar or Spruce to start. There are currently five available workflows.

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PlantGenIE | plantgenie.org Reviews

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The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualizing and analyzing genomics and transcriptomics data for different plant species. Currently it includes dedicated web portals for enabling in-depth exploration of poplar, Norway spruce, and Arabidopsis. The PlantGenIE platform uses Chado databases and is based on the GenIE CMS (Content Management System). Select Arabidopsis, Poplar or Spruce to start. There are currently five available workflows.

<META> KEYWORDS

1 plantgenie org

2 select species

3 select workflow

4 create workflow

5 popgenie org

6 congenie org

7 atgenie org

8 annotate genelist

9 explore gene expression

10 explore co expression

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plantgenie org,select species,select workflow,create workflow,popgenie org,congenie org,atgenie org,annotate genelist,explore gene expression,explore co expression,automation made simple,publications,new phytologist,synergy,next,try new workflows

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PlantGenIE | plantgenie.org Reviews

https://plantgenie.org

The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualizing and analyzing genomics and transcriptomics data for different plant species. Currently it includes dedicated web portals for enabling in-depth exploration of poplar, Norway spruce, and Arabidopsis. The PlantGenIE platform uses Chado databases and is based on the GenIE CMS (Content Management System). Select Arabidopsis, Poplar or Spruce to start. There are currently five available workflows.

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synergy.plantgenie.org

Synergy

Your browser is old and dusty. Try Google Chrome. This site uses cookies. The interaction or cooperation of two or more organizations, substances, or other agents to produce a combined effect greater than the sum of their separate effects. This is a set of tools for exploring the gene regulation in the cyanobacterium Synechocystis. To get started, go to the Gene search. Below you can find a video describing case study 2 from our paper ( Mähler et al. Sp PCC6803. PLOS ONE 9(11):e113496.

complex2.plantgenie.org

ComPlEx 2.0

Please wait for content generation. Please wait for content generation. Send to gene baskets. Citation and Contact us Site Views for Last six months. A manuscript describing Complex has been published. If you make use of the resource, please cite us:. S Netotea, D. Sundell, N. R. Street and T. R. Hvidsten. ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa. BMC Genomics 15:106, 2014. What color is a " Poplar. Your message was sent succssfully!

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plantgenie.org

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BLAST | PlantGenIE Help

http://plantgenie.org/help

The BLAST (Basic Local Alignment Search Tool) tool compares input sequences to PlantGenIE sequence databases to identify homologous sequence matches. Button at the bottom of the page. PlantGenIE BLAST uses standard default NCBI BLAST options. However users can change the following advanced options:. Substitution matrix that determines the cost of each possible residue mismatch between query and target sequence. See BLAST substitution matrices. The maximum expectation value of retained alignments. PlantGe...

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bioinformatics.psb.ugent.be

Yves Van de Peer

http://bioinformatics.psb.ugent.be/people/profile/yvesvandepeer

Bioinformatics and Evolutionary Genomics. Yves Van de Peer. Group member since 2001). 32 (0) 9 331 3807. VIB / Ghent University. Bioinformatics and Systems Biology. 26 April 1965, Turnhout, Belgium. In Bioinformatics and Genome Biology at Ghent University, Belgium. June 2001 - September 2002: Group Leader. Of Bioinformatics and Guest Professor. At the Department of Plant Systems Biology at Ghent University (Belgium) and at the Department of Biomedical Sciences at the University of Antwerp (Belgium).

upsc.se

Populus Genome Program - Umeå Plant Science Centre

https://www.upsc.se/resources/populus-genome-program.html

Bookings, Info etc. Trees and Crops for the Future. Poplar in vito Rooms. Growth Rooms Floor 5. Engineering Programme in Bioresource Technology. The Populus Genome Program. The Populus Genome Program is a part of SCTFG (Swedish Center for Tree Functional Genomics) and is the most comprehensive tree genome program in the world. Discontinued - use popgenie. Cloning of full length poplar transcription factor cDNAs and expression in. PopGenIE facilitates the exploration of genes and gene function in.

atgenie.org

GBrowse Synteny | PlantGenIE.org

http://atgenie.org/synteny

View active genelist (.

atgenie.org

BLAST/BLAT | PlantGenIE.org

http://atgenie.org/blast

BLASTN - nucleotide query to nucleotide db. BLASTP - protein query to protein db. TBLASTN - protein query to translated (6 frames) nt db. TBLASTX - transl. (6 frames) nucl. query to transl (6) nt db. BLASTX - translated (6 frames) nucl. query to protein db. Mold, Protozoan, and Coelocoel Mitochondrial. Mold, Protozoan, and Coelocoel Mitochondrial. View active genelist (.

atgenie.org

User account | PlantGenIE.org

http://atgenie.org/user

Enter your PlantGenIE.org username. Enter the password that accompanies your username. View active genelist (.

atgenie.org

Gene List | PlantGenIE.org

http://atgenie.org/genelist

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atgenie.org

GBrowse | PlantGenIE.org

http://atgenie.org/gbrowse

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atgenie.org

JBrowse | PlantGenIE.org

http://atgenie.org/jbrowse

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Plant Genetic Solutions Pty Ltd. Plant Genetic Solutions Pty Ltd is a research and development company specializing in developing novel and practical solutions to improve crop productivity. We also perform contract research and provide consulting for other private companies, universities, research organisations and farmers. Germplasm enhancement/pre-breeding: Research to develop novel germplasm and varieties. Variety development: Development of new improved varieties in different crops.

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Retrieved from " http:/ www.plantgenewiki.org/genewiki/index.php/Main Page. This page was last modified on 11 June 2011, at 18:16.

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plantgenie.net

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plantgenie.org

PlantGenIE

The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualizing and analyzing genomics and transcriptomics data for different plant species. Currently it includes dedicated web portals for enabling in-depth exploration of poplar, Norway spruce, and Arabidopsis. The PlantGenIE platform uses Chado databases and is based on the GenIE CMS (Content Management System). Select Arabidopsis, Poplar or Spruce to start. There are currently five available workflows.

plantgenius.com

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plantgenome.agtec.uga.edu

Welcome to PGML

8226; Library distribution. USAID Feed The Future. Future Laboratory For Climate Resilient Sorghum. NSF 2010 project on gene position and function. PFI, scaling a new adaptive peak for cotton. Our research falls into three general areas:. Identification of specific genes that are responsible for characteristics important to plant development, evolution, or agriculture, and elucidating the function(s) of these genes. The funds to support our research derive largely from federal and private-sector grants, ...

plantgenome.com

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plantgenome.net

Main Page - Plantgenome.net

Ucgrvs auto owners insurance. Retrieved from " http:/ Plantgenome.net/index.php/Main Page. Related Links [ Edit. This page was last modified on 22 July 2011, at 03:37. This page has been accessed 35,114 times. Content is available under.

plantgenome.pgml.uga.edu

Welcome to PGML

8226; Library distribution. USAID Feed The Future. Future Laboratory For Climate Resilient Sorghum. NSF 2010 project on gene position and function. PFI, scaling a new adaptive peak for cotton. Our research falls into three general areas:. Identification of specific genes that are responsible for characteristics important to plant development, evolution, or agriculture, and elucidating the function(s) of these genes. The funds to support our research derive largely from federal and private-sector grants, ...