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Produce nucleotide-resolution maps of cis-regulatory DNA in major developmental stages, tissues and cell types in the reference strain Col-0. Define the chromatin structural and cis-regulatory DNA response programs of Col-0 tissues to major hormonal, biotic and abiotic cues. Determine the divergence and conservation of cis-regulatory DNA in closely related Arabidopsis ecotypes. Dec 15, 2013. Dec 15, 2013. RNA-Seq 7d Seedling Dark 30min Light. Dec 15, 2013. RNA-Seq 7d Seedling Dark 3hr Light. Dec 15, 2013.

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Plant Regulome - Home | plantregulome.org Reviews
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Produce nucleotide-resolution maps of cis-regulatory DNA in major developmental stages, tissues and cell types in the reference strain Col-0. Define the chromatin structural and cis-regulatory DNA response programs of Col-0 tissues to major hormonal, biotic and abiotic cues. Determine the divergence and conservation of cis-regulatory DNA in closely related Arabidopsis ecotypes. Dec 15, 2013. Dec 15, 2013. RNA-Seq 7d Seedling Dark 30min Light. Dec 15, 2013. RNA-Seq 7d Seedling Dark 3hr Light. Dec 15, 2013.
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1 plant arabidopsis
2 data
3 networks
4 protocols
5 publications
6 community
7 plant regulome
8 we aim to
9 data releases
10 dnase 7d seedling
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plant arabidopsis,data,networks,protocols,publications,community,plant regulome,we aim to,data releases,dnase 7d seedling,all data releases,genome browser
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Plant Regulome - Home | plantregulome.org Reviews

https://plantregulome.org

Produce nucleotide-resolution maps of cis-regulatory DNA in major developmental stages, tissues and cell types in the reference strain Col-0. Define the chromatin structural and cis-regulatory DNA response programs of Col-0 tissues to major hormonal, biotic and abiotic cues. Determine the divergence and conservation of cis-regulatory DNA in closely related Arabidopsis ecotypes. Dec 15, 2013. Dec 15, 2013. RNA-Seq 7d Seedling Dark 30min Light. Dec 15, 2013. RNA-Seq 7d Seedling Dark 3hr Light. Dec 15, 2013.

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genome.plantregulome.org genome.plantregulome.org

UCSC Genome Browser Home

About the UCSC Genome Bioinformatics Site. Welcome to the UCSC Genome Browser website. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides portals to ENCODE. Data at UCSC (2003 to 2012) and to the Neandertal. Project. Download or purchase the Genome Browser source code, or the Genome Browser in a Box ( GBiB. At our online store. We encourage you to explore these sequences with our tools. The Genome Browser. The Genome Browser project ...

INTERNAL PAGES

plantregulome.org plantregulome.org
1

Plant Regulome - Publications

http://www.plantregulome.org/publications

Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana.

2

Index of /public/rna/LIGHT_DARK/all-reads

http://www.plantregulome.org/public/rna/LIGHT_DARK/all-reads

Index of /public/rna/LIGHT DARK/all-reads. Apache/2.2.3 (Red Hat) Server at www.plantregulome.org Port 80.

3

Index of /public/dnase/other/all-reads

http://www.plantregulome.org/public/dnase/other/all-reads

Apache/2.2.3 (Red Hat) Server at www.plantregulome.org Port 80.

4

Plant Regulome -

http://www.plantregulome.org/data

Download data from here. Click any filled square. To be taken to the Plant Regulome Browser to view the data. Squares containing a "S" are submitted. You can also read summaries of the data types. CELL TYPES - DNase. CELL TYPES - DGF. ROOT HAIR - DNase. ROOT HAIR - DGF. ROOT NON-HAIR - DNase. ROOT NON-HAIR - DGF. SEED COAT 4DPA - DNase. SEED COAT 4DPA - DGF. SEED COAT 7DPA - DNase. SEED COAT 7DPA - DGF. HEAT TREATMENT - DNase. HEAT TREATMENT - RNA-Seq. HEAT TREATMENT - DGF. CONTROL (70M) - DNase. Data po...

5

Plant Regulome - Protocols

http://www.plantregulome.org/protocols

You can download documentation and code for hotspot here. An expansive human regulatory lexicon encoded in transcription factor footprints. Nature. 2012 Sep 6;489(7414):83-90.

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Plant Regulome - Home

Produce nucleotide-resolution maps of cis-regulatory DNA in major developmental stages, tissues and cell types in the reference strain Col-0. Define the chromatin structural and cis-regulatory DNA response programs of Col-0 tissues to major hormonal, biotic and abiotic cues. Determine the divergence and conservation of cis-regulatory DNA in closely related Arabidopsis ecotypes. Dec 15, 2013. Dec 15, 2013. RNA-Seq 7d Seedling Dark 30min Light. Dec 15, 2013. RNA-Seq 7d Seedling Dark 3hr Light. Dec 15, 2013.

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