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PLUMED

PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C , can be easily interfaced with both fortran and C/C codes. May 2014: the second.

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PLUMED | plumed.org Reviews

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PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C , can be easily interfaced with both fortran and C/C codes. May 2014: the second.

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PLUMED | plumed.org Reviews

https://plumed.org

PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C , can be easily interfaced with both fortran and C/C codes. May 2014: the second.

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plumed.org

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Older Versions - PLUMED

http://www.plumed.org/documentation/older-versions

Here you can find the documentation for all the old versions of PLUMED. Manual (version 2.1). Manual (version 2.0). Manual (version 1.3.0 - Nov 2011). Jan 9, 2016, 9:22 AM.

2

New release: PLUMED 2.2.2 - PLUMED

http://www.plumed.org/get-it/news/newreleaseplumed222

New release: PLUMED 2.2.2. Posted Apr 13, 2016, 7:58 AM. PLUMED version 2.2.2 is now available for download. It is a maintenance release on the 2.2.x branch that fixes a few bugs and adds some optimization to the code, s. You can find the new version in. The download section of the. Webpage. It is also tagged on github (v2.2.2).

3

Recent site activity - PLUMED

http://www.plumed.org/system/app/pages/recentChanges

Feb 23, 2017, 12:34 AM. Giovanni Bussi edited Home. Feb 23, 2017, 12:33 AM. Giovanni Bussi edited Home. Feb 23, 2017, 12:30 AM. Giovanni Bussi edited Home. Feb 23, 2017, 12:29 AM. Giovanni Bussi edited Home. Feb 23, 2017, 12:21 AM. Giovanni Bussi edited Home. Feb 23, 2017, 12:18 AM. Giovanni Bussi edited Home. Feb 23, 2017, 12:16 AM. Giovanni Bussi edited Home. Feb 20, 2017, 12:14 AM. Giovanni Bussi created PLUMED Tutorial and User Meeting. Jan 16, 2017, 5:18 AM. Sep 12, 2016, 9:50 AM. Carlo Camilloni at...

4

Git - PLUMED

http://www.plumed.org/git

The development version (PLUMED 2) is hosted on a public git repository (. Feel free to try it and provide feedbacks!

5

People - PLUMED

http://www.plumed.org/people

University of Cambridge, UK. Technische Universität München, Germany). Queen's University Belfast, UK). Schrödinger Inc., UK). Contributors to PLUMED 2.x. Contributors to PLUMED 1.x. Ricardo Broglia, Davide Donadio, Alessandro Laio, Francesco Marini, Michele Parrinello.

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GROMACS Plugin - PyMOLWiki

http://www.pymolwiki.org/index.php/GROMACS_Plugin

Laboratory of Biomolecular Systems Simulations. Is plugin for PyMOL, which add molecular dynamics simulation feature. It is meant to be easy to use. The plugin uses GROMACS tools as a back-end. Project is developed as an open source and as such create full open source stack together with PyMOL and GROMACS. Because GROMACS can compile easily only on Unix like systems, the plugin also keep compatibility only with those. No Windows port is expected. Other GNU/Linux and Unix. Sudo add-apt-repository ppa:toma...

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PLUMED

PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C , can be easily interfaced with both fortran and C/C codes. May 2014: the second.

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X-ma vie en plus court-x. O slt c m@rin tt! Voici mon new blog et celui si sera mieux ke le présédent o. 08/10/2007 at 9:56 AM. 15/12/2007 at 9:57 AM. Subscribe to my blog! Bienvenue sur mon blog! Don't forget that insults, racism, etc. are forbidden by Skyrock's 'General Terms of Use' and that you can be identified by your IP address (66.160.134.62) if someone makes a complaint. Posted on Monday, 08 October 2007 at 9:56 AM. Edited on Monday, 08 October 2007 at 10:31 AM. My couzine é son chewi! Mon vilag...

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