polydoms.cchmc.org

PolyDoms

PolyDoms: Mapping of Human Coding SNPs onto Protein Domains. Based on dbSNP build 125. SIFT/PolyPhen analysis - database details. Help with search options and file formats. For multiple options use CTRL click. Search by disease, gene ontology, pathway, or gene family. A disintegrin and metalloproteinase with thrombospondin motifs. ATP-Binding Cassette (ABC) Transporters. Chemokine (C-C motif) ligands. Chemokine (C-C motif) receptors. Potassium voltage gated channel. Zinc finger and BTB domain containing.

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PolyDoms | polydoms.cchmc.org Reviews

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PolyDoms: Mapping of Human Coding SNPs onto Protein Domains. Based on dbSNP build 125. SIFT/PolyPhen analysis - database details. Help with search options and file formats. For multiple options use CTRL click. Search by disease, gene ontology, pathway, or gene family. A disintegrin and metalloproteinase with thrombospondin motifs. ATP-Binding Cassette (ABC) Transporters. Chemokine (C-C motif) ligands. Chemokine (C-C motif) receptors. Potassium voltage gated channel. Zinc finger and BTB domain containing.

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PolyDoms | polydoms.cchmc.org Reviews

https://polydoms.cchmc.org

PolyDoms: Mapping of Human Coding SNPs onto Protein Domains. Based on dbSNP build 125. SIFT/PolyPhen analysis - database details. Help with search options and file formats. For multiple options use CTRL click. Search by disease, gene ontology, pathway, or gene family. A disintegrin and metalloproteinase with thrombospondin motifs. ATP-Binding Cassette (ABC) Transporters. Chemokine (C-C motif) ligands. Chemokine (C-C motif) receptors. Potassium voltage gated channel. Zinc finger and BTB domain containing.

INTERNAL PAGES

polydoms.cchmc.org

1

PolyDoms - SIFT and PolyPhen Analysis Database Details

https://polydoms.cchmc.org/polydoms/siftpolyphen.jsp

PolyDoms - SIFT and PolyPhen Analysis Database Details. Based on dbSNP build 125. SIFT/PolyPhen analysis - database details. SIFT and PolyPhen Analysis Database Details. Details of databases used for SIFT analysis. Uniref100 from UniProt (Universal Protein Resource) ( http:/ www.pir.uniprot.org/database/download.shtml. July 1, 2005. 2,392,904 proteins. 91,269 human proteins. Details of databases used for PolyPhen analysis. July 7, 2005. Release 5.0. 70,627 human proteins. July 7, 2005. July 7, 2005.

2

PolyDoms

https://polydoms.cchmc.org/polydoms/links.jsp

PolyDoms: Mapping of Human Coding SNPs onto Protein Domains. Based on dbSNP build 125. SIFT/PolyPhen analysis - database details. Publicly available SNP database. Currently has about 10 million human SNPs throughout the genome. PolyDoms uses dbSNP for SNP information. Database for gene annotations. Links genes and proteins to pathologies, phenotypes, physiology, and interaction by linking through pubmed abstracts. Jackson lab's mouse informatics data. Biomolecular Interaction Network Database. BIND is a ...

3

PolyDoms - Disclaimer

https://polydoms.cchmc.org/polydoms/disclaimer.jsp

Based on dbSNP build 125. SIFT/PolyPhen analysis - database details. 2006 Cincinnati Children's Hospital Medical Center.

4

PolyDoms

https://polydoms.cchmc.org/polydoms/supplementary/index.jsp

Based on dbSNP build 125. SIFT/PolyPhen analysis - database details. Supplementary File 1: Current status. Total number of refseq (build 36.1) human protein sequences. Number of unique human refseq genes. Number of human genes having isoforms. Number of coding-SNPs (cSNPs) (dbSNP build 125). Number of nonsynonymous SNPs (nsSNPs). Number of synonymous SNPs (synSNPs). Number of human genes with nonsynonymous SNPs (nsSNPs). Number of human genes with synonymous SNPs (nsSNPs). SIFT (version 2.1). List of mam...

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mutpred.mutdb.org

MutPred Server

http://mutpred.mutdb.org/view.html

Sean Mooney Lab Home. Predrag Radivojac Lab Home. In order to retrieve the information please enter the Job ID in the field below. In Silico Functional Profiling. Last modified: Tue Apr 19 19:02:47 EDT 2011.

mutpred.mutdb.org

MutPred Server

http://mutpred.mutdb.org/about.html

Sean Mooney Lab Home. Predrag Radivojac Lab Home. How do I interpret the results? The output of MutPred contains a general score ( g. Ie, the probability that the amino acid substitution is deleterious/disease-associated, and top 5 property scores ( p. Is the P-value that certain structural and functional properties are impacted. Certain combinations of high values of general scores and low values of property scores are referred to as hypotheses. 005 are referred to as actionable hypotheses. 2009) The Hu...

mutdb.org

Mooney Lab - MutDB gene browse T1*-TY*

http://www.mutdb.org/genes/browse/letter:T/start:1/end:Z

Click to read more." target=" blank". Click to read more." target=" blank" Mooney Lab Home. Genes T1* - TY*. Trace amine-associated receptor 1 [Homo sapiens]. Trace amine-associated receptor 2 isoform 1. Trace amine-associated receptor 2 isoform 2. Trace amine-associated receptor 5 [Homo sapiens]. Trace amine-associated receptor 6 [Homo sapiens]. Trace amine-associated receptor 8 [Homo sapiens]. Trace amine-associated receptor 9. TGF-beta-activated kinase 1 and MAP3K7-binding pro. Transforming acidic coi...

mutdb.org

Mooney Lab - MutDB gene browse K1*-KY*

http://www.mutdb.org/genes/browse/letter:K/start:1/end:Z

Click to read more." target=" blank". Click to read more." target=" blank" Mooney Lab Home. Genes K1* - KY*. KN motif and ankyrin repeat domain-containing prot. KN motif and ankyrin repeat domain-containing prot. KN motif and ankyrin repeat domain-containing prot. KN motif and ankyrin repeat domain-containing prot. KN motif and ankyrin repeat domain-containing prot. KN motif and ankyrin repeat domain-containing prot. KAT8 regulatory NSL complex subunit 1 isoform 2. KAT8 regulatory NSL complex subunit 2.

mutdb.org

Mooney Lab - MutDB gene browse S1*-SY*

http://www.mutdb.org/genes/browse/letter:S/start:1/end:Z

Click to read more." target=" blank". Click to read more." target=" blank" Mooney Lab Home. Genes S1* - SY*. Protein S100-A5 [Homo sapiens]. Protein S100-A7-like 2 [Homo sapiens]. S100P-binding protein isoform b [Homo sapiens]. S100P-binding protein isoform a. Protein S100-Z [Homo sapiens]. Sphingosine 1-phosphate receptor 1. Sphingosine 1-phosphate receptor 2 [Homo sapiens]. Sphingosine 1-phosphate receptor 3. Sphingosine 1-phosphate receptor 4 precursor [Homo. Sphingosine 1-phosphate receptor 5.

mutdb.org

Mooney Lab - MutDB gene browse C1*-CY*

http://www.mutdb.org/genes/browse/letter:C/start:1/end:Z

Click to read more." target=" blank". Click to read more." target=" blank" Mooney Lab Home. Genes C1* - CY*. Uncharacterized protein C10orf105 [Homo sapiens]. Uncharacterized protein C10orf105 [Homo sapiens]. Leucine-rich repeat-containing protein C10orf11 [H. Putative uncharacterized protein C10orf114 [Homo s. Adipose most abundant gene transcript 2 protein [H. Uncharacterized protein C10orf120 [Homo sapiens]. Putative uncharacterized protein C10orf122 [Homo s. Fucose mutarotase isoform 1 [Homo sapiens].

mutdb.org

Mooney Lab - MutDB gene browse R1*-RY*

http://www.mutdb.org/genes/browse/letter:R/start:1/end:Z

Click to read more." target=" blank". Click to read more." target=" blank" Mooney Lab Home. Genes R1* - RY*. R3H and coiled-coil domain-containing protein 1. R3H domain-containing protein 1 [Homo sapiens]. R3H domain-containing protein 2 [Homo sapiens]. R3H domain-containing protein 4 [Homo sapiens]. Peptidase inhibitor R3HDML precursor [Homo sapiens. Ras-related protein Rab-11A isoform 2. Ras-related protein Rab-11A isoform 1 [Homo sapien. Rab11 family-interacting protein 1 isoform 3 [Homo.

mutdb.org

Mooney Lab - MutDB gene browse O1*-OY*

http://www.mutdb.org/genes/browse/letter:O/start:1/end:Z

Click to read more." target=" blank". Click to read more." target=" blank" Mooney Lab Home. Genes O1* - OY*. Omega-3 fatty acid receptor 1 isoform GPR120-S. Omega-3 fatty acid receptor 1 isoform GPR120-L. 2'-5'-oligoadenylate synthase 1 isoform 3. 2'-5'-oligoadenylate synthase 1 isoform 2. 2'-5'-oligoadenylate synthase 1 isoform 1. 2'-5'-oligoadenylate synthase 2 isoform 3 [Homo sa. 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo sa. 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo sa. In Silico Functiona...

mutdb.org

Mooney Lab - MutDB gene browse G1*-GY*

http://www.mutdb.org/genes/browse/letter:G/start:1/end:Z

Click to read more." target=" blank". Click to read more." target=" blank" Mooney Lab Home. Genes G1* - GY*. G2/M phase-specific E3 ubiquitin-protein ligase. Ras GTPase-activating protein-binding protein 1. Ras GTPase-activating protein-binding protein 1. Glucose-6-phosphatase 2 isoform 2. Glucose-6-phosphatase 2 isoform 1. Glucose-6-phosphatase 3 [Homo sapiens]. Glucose-6-phosphate 1-dehydrogenase isoform a. Glucose-6-phosphate 1-dehydrogenase isoform b. GRB2-associated-binding protein 1 isoform b.

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PolyDoms: Mapping of Human Coding SNPs onto Protein Domains. Based on dbSNP build 125. SIFT/PolyPhen analysis - database details. Help with search options and file formats. For multiple options use CTRL click. Search by disease, gene ontology, pathway, or gene family. A disintegrin and metalloproteinase with thrombospondin motifs. ATP-Binding Cassette (ABC) Transporters. Chemokine (C-C motif) ligands. Chemokine (C-C motif) receptors. Potassium voltage gated channel. Zinc finger and BTB domain containing.

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