zerothorder.blogspot.com
zeroth order: Chopping proteins with Moose
http://zerothorder.blogspot.com/2009/04/chopping-proteins-with-moose.html
A blog about Modern Perl, bioinformatics and anything else that I feel like rambling about. Monday, April 27, 2009. Chopping proteins with Moose. It comes a time in the life of a wet lab geek when one has to simulate the outcome of a proteolytic degradation of a protein of known sequence (those who said that haven't are lying). So for a problem this common, I did what I always do first: google for an already made solution. Surprisingly, after ten minutes or so, I came out empty-handed. For it. One of...
lightning.med.monash.edu
Procleave: in silico identification of protease substrate cleavage sites
http://lightning.med.monash.edu/links.html
Identification of protease-specific substrate cleavage sites. This collection of links summarizes previously developed computational tools focusing on caspase substrate cleavage predictions. These tools can be online webservers that can be employed to make predictions about caspase cleavage sites by submitting query substrate sequences, or websites that offers standalone softwares for users to download. SVM approach for predicting caspase substrate cleavage sites using binary sequence encoding.
brunov.org
Chopping proteins with Moose
http://brunov.org/2009/04/chopping-proteins-with-moose.html
Chopping proteins with Moose. Apr 27, 2009. It comes a time in the life of a wet lab geek when one has to simulate the outcome of a proteolytic degradation of a protein of known sequence (those who said that haven't are lying). So for a problem this common, I did what I always do first: google for an already made solution. Surprisingly, after ten minutes or so, I came out empty-handed. Now don't get me wrong: there. Solutions out there, like PeptideCutter. The module is up at my github repo. This will co...
lightning.med.monash.edu.au
Procleave: in silico identification of protease substrate cleavage sites
http://lightning.med.monash.edu.au/links.html
Identification of protease-specific substrate cleavage sites. This collection of links summarizes previously developed computational tools focusing on caspase substrate cleavage predictions. These tools can be online webservers that can be employed to make predictions about caspase cleavage sites by submitting query substrate sequences, or websites that offers standalone softwares for users to download. SVM approach for predicting caspase substrate cleavage sites using binary sequence encoding.
zerothorder.blogspot.com
zeroth order: April 2009
http://zerothorder.blogspot.com/2009_04_01_archive.html
A blog about Modern Perl, bioinformatics and anything else that I feel like rambling about. Monday, April 27, 2009. Chopping proteins with Moose. It comes a time in the life of a wet lab geek when one has to simulate the outcome of a proteolytic degradation of a protein of known sequence (those who said that haven't are lying). So for a problem this common, I did what I always do first: google for an already made solution. Surprisingly, after ten minutes or so, I came out empty-handed. For it. One of...
expasy.org
ExPASy: SIB Bioinformatics Resource Portal - Categories
http://www.expasy.org/proteomics/protein_characterisation_and_function
Query within a category:. Query a specific database:. Protein sequences and identification. Sequence sites, features and motifs. No support from the ExPASy Team). Bull; functional information on proteins • [more]. Bull; protein sequence database • [more]. Bull; human proteins • [more]. Bull; neXtProt is an innovative knowledge platform dedicated to human proteins. This resource contains a wealth of high-quality data on all the human proteins that are produced by the 20'000 protein-coding genes found ...
