noireauxlab.org
Links
http://www.noireauxlab.org/Links.html
Albert Libchaber, Rockefeller University. Roy Bar-Ziv, Weizmann Institute of Sciences. Richard Murray, Caltech. Chris Voigt, MIT. Albrecht Ott, Universitat des Saarlandes. Julius Lucks, Cornell University. Lital Alfonta, Ben-Gurion University of the Negev. Yusuke Maeda, Kyushu University. Paul Jardine and Shelley Grimes, University of Minnesota. Christophe Vieu and Emmanuelle Trevisiol, CNRS Toulouse. Biophysics in Physics at UMN. Inverted microscopes Olympus IX71, IX81. Software and other web resources.
pathways.citrusgenomedb.org
Omics Data Analysis
http://pathways.citrusgenomedb.org/omics.shtml
Search Genes, Proteins or RNAs. Google Search of this Site. Browse Enzyme Commission Ontology. Generate Metabolic Map Poster. Section of the Website User Guide. Gene Expression Data Analysis. Paint gene expression data onto metabolic map. Data can be uploaded from a file, imported from PortEco. Or imported from a recently visited group. From the Cellular Overview. Page, choose the data source from the options in the navigation box on the right. Paint gene expression data onto regulatory map. Data can be ...
jimhu.org
web development | Blogs for Industry
http://jimhu.org/category/web-development
Blogs for the dead. About Blogs for Industry. Category Archives: web development. JSmol2wp plugin released at wordpress.org. A while ago I wrote a WordPress shortcode plugin to embed Bob Hanson’s JSmol. Molecular structure viewer into WordPress posts and pages. Last weekend I finally got it into the wordpress.org plugin repository. The basic usage for proteins is via a shortcode like this:. The plugin fetches the appropriate record from the PDB and generates an applet like this:. February 2, 2015. PortEc...
jimhu.org
Black Forest Cake part 2: Everything else | Blogs for Industry
http://jimhu.org/black-forest-cake-part-2-everything-else
Blogs for the dead. About Blogs for Industry. Black Forest Cake part 2: Everything else. Once the Genoise was cooled, I made cake syrup and chocolate shavings (sort of). Cake syrup is just 50% sucrose plus flavorings. The recipe calls for 50% syrup an 50% Kirsch. We didn’t have Kirsch and Texas doesn’t sell anything over 17% alcohol on Sundays. So I used some Frambois we had around. We tried to make the chocolate shavings using this method. This entry was posted in food. April 27, 2015. On Yet more testi...
pathways.cottongen.org
Web Site User’s Guide for Pathway Tools-Based Web Sites
http://pathways.cottongen.org/PToolsWebsiteHowto.shtml
Search Genes, Proteins or RNAs. Google Search of this Site. Browse Enzyme Commission Ontology. Generate Metabolic Map Poster. Web Site User’s Guide for Pathway Tools-Based Web Sites. 2 Selecting the Database to Search. 3 Searching Pathway/Genome Databases. 32 Search Menu: Object Searches. 33 Search Menu → Cross Organism Search. 34 Search Menu → BLAST search. 35 Search Menu → Google This Site. 36 Search Menu → Search Full-text Articles. 51 Displaying External Tracks on the Genome Browser. This document de...
jimhu.org
Testing JSmol2wp | Blogs for Industry
http://jimhu.org/testing-jsmol2wp
Blogs for the dead. About Blogs for Industry. Dragging should rotate the model, which is embedded via a shortcode that passes a bunch of parameters, including the PDB accession, the caption, and code to create custom buttons and other interface elements. The buttons run Jmol scripts to select, zoom, recolor etc. The plugin detects multiple instances of the shortcode that creates the applets as long as they use different pdb accessions. This is the structure of the CynR DNA binding domain from a local file.
jimhu.org
JSmol2wp plugin released at wordpress.org | Blogs for Industry
http://jimhu.org/jsmol2wp-plugin-released-at-wordpress-org
Blogs for the dead. About Blogs for Industry. JSmol2wp plugin released at wordpress.org. A while ago I wrote a WordPress shortcode plugin to embed Bob Hanson’s JSmol. Molecular structure viewer into WordPress posts and pages. Last weekend I finally got it into the wordpress.org plugin repository. The basic usage for proteins is via a shortcode like this:. The plugin fetches the appropriate record from the PDB and generates an applet like this:. This entry was posted in computer stuff. February 2, 2015.
jimhu.org
More JSmol2wp testing | Blogs for Industry
http://jimhu.org/more-jsmol2wp-testing
Blogs for the dead. About Blogs for Industry. As of version 0.7, I wonder whether having two posts with viewers causes applet name clashes. The prediction is that this would work while viewing one post, but not on the home page. This prediction turned out to be true. This first item loaded the first one from the next post, while the first item in the next post didn’t load. Should work now in 0.8. Load file from Henry Rzepa's blog. This entry was posted in science. June 12, 2014. On More JSmol2wp testing.
