POXVIRUS.ORG

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/GINGER1

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Gypsy-Integrase-Related Type 1 ( GINGER1. Is a recently described pool of exon-intron transposons ( Bao et al. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. At its C-terminus. GINGER1. Cysteine protease domain, or an Ulp1. Element...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/Retroviridae

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Evolutionary history and viral taxonomy:. Vertebrate retroviruses ( Retroviridae. Originally received attention when infectious representatives were characterized in humans. However, it is now known that any LTR retrotransposon capable of recruiting a third ORF envelope gene ( env. Is potentially capable of becoming a retrovirus ( env.

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/GINA

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Is a recently described pool of exon-intron transposons ( Marin 2010. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. At its C-terminus. GINA. Cysteine protease domain, or an Ulp1. Protease catalytic domain ( Marin 2010. Elements ar...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/GINNY

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Is a recently described pool of exon-intron transposons ( Marin 2010. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. At its C-terminus. GINNY. Cysteine protease domain, or an Ulp1. Protease catalytic domain ( Marin 2010. Elements a...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/Bel/Pao

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Evolutionary history and in-progress taxonomy:. LTR retroelements ( Malik et al. Constitute a family of LTR retrotransposons and retroviruses described to date only in metazoan genomes ( Copeland et al. This family was originally characterized with the discovery of element sequences such as Pao. Davis and Judd 1995. And the various Cer.

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/Retroelements

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Tyrosine recombinase (YR) retroelements. Retroelements (retrotransposons and retroviruses) can currently be divided into four systems or groups commonly known as the long terminal repeat (LTR) retroelements. Eickbush and Jamburuthugoda 2008. Genes, and env. Families (for more details, see LTR retroelements. On the basis of their molecul...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/Ty3/Gypsy

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Evolutionary history and in-progress taxonomy:. Branch 2 (non-chromodomain retroviruses and LTR retrotransposons). Of particular interest is the common evolutionarily history between several Ty3/Gypsy. Retroviruses (see, Eickbush and Malik 2002. Upon this, it is now known that env. Like genes are not exclusive of Retroviridae. Species t...

gydb.uv.es

Gypsy Database 2.0

http://gydb.uv.es/index.php/LTR_retroelements

BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. And other non-autonomous retroelements evolved from LTR retroelements. We additionally consider caulimoviruses of plants within the system of autonomous LTR retroelements because of their common evolutionary relationship with them based on the gag-pol region. The internal region con...

gydb.uv.es

Gypsy Database 2.0

http://gydb.uv.es/index.php/Intro

BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. LTR retroelements, and clan AA of Aspartic Peptidases. GyDB 2.0 is an update based on the analysis of Ty3/Gypsy, Retroviridae, Ty1/Copia. LTR retroelements and the Caulimoviridae. Since the existence of mobile DNA was first suggested by McClintock ( McClintock 1948. That mediate the...

gydb.uv.es

Gypsy Database 2.0

http://gydb.uv.es/index.php/Caulimoviridae

BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Biological distribution and host symptomatology. Evolutionary history and viral taxonomy. Are DNA pararetroviruses that replicate in plants via a RNA intermediate evolved from LTR retroelements (for more details, see Bousalem et al. To define animal ( Hepadnaviridae. The caulimovira...