PRDOS.HGC.JP

PrDOS - Protein disorder prediction server

PrDOS is a server to predict natively disordered regions of a protein chain from its amino acid sequence. PrDOS returns disorder probability of each residue as prediction results. Input protein amino acid sequences in plain text or FASTA format. The server accepts single-letter standard amino acid codes. And the code 'X' for non-standard amino acids. The codes for ambiguous amino acids. And paticular non-standard amino acids. Query amino acid sequence ( HELP. Prediction false positive rate.

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PrDOS - Protein disorder prediction server | prdos.hgc.jp Reviews

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PrDOS is a server to predict natively disordered regions of a protein chain from its amino acid sequence. PrDOS returns disorder probability of each residue as prediction results. Input protein amino acid sequences in plain text or FASTA format. The server accepts single-letter standard amino acid codes. And the code 'X' for non-standard amino acids. The codes for ambiguous amino acids. And paticular non-standard amino acids. Query amino acid sequence ( HELP. Prediction false positive rate.

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PrDOS - Protein disorder prediction server | prdos.hgc.jp Reviews

https://prdos.hgc.jp

PrDOS is a server to predict natively disordered regions of a protein chain from its amino acid sequence. PrDOS returns disorder probability of each residue as prediction results. Input protein amino acid sequences in plain text or FASTA format. The server accepts single-letter standard amino acid codes. And the code 'X' for non-standard amino acids. The codes for ambiguous amino acids. And paticular non-standard amino acids. Query amino acid sequence ( HELP. Prediction false positive rate.

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prdos.hgc.jp

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PrDOS - Protein disorder prediction server

http://prdos.hgc.jp/index.html

PrDOS is a server to predict natively disordered regions of a protein chain from its amino acid sequence. PrDOS returns disorder probability of each residue as prediction results. Input protein amino acid sequences in plain text or FASTA format. The server accepts single-letter standard amino acid codes. And the code 'X' for non-standard amino acids. The codes for ambiguous amino acids. And paticular non-standard amino acids. Query amino acid sequence ( HELP. Prediction false positive rate.

2

PrDOS - Usage

http://prdos.hgc.jp/usage.html

Input query amino acid sequence. The single letter standard amino acid code. The ambiguous amino acid code. Asparagine or aspartic acid. Glutamine or glutamic acid. The paricular non-statndard amino acid code. Prediction false positive rate. ROC curves of PrDOS. The prediction system is composed of two predictors ( see the detail. Recieve prediction results by e-mail. Output format of prediction results. Example of e-mail outputs. Example of HTML formatted outputs.

3

PrDOS - About

http://prdos.hgc.jp/about.html

Recent progress in structural genomics has revealed that many proteins have regions with very flexible and unstable structures, even in their native states. Such proteins or regions are called natively disordered or unstructured. Disordered protein regions often lead to difficulties in purification and crystallization of proteins, and become a bottleneck in high throughput structural determination. Therefore, it is quite necessary to identify the disordered regions of target proteins from the...

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endolab.jp

Endo Lab. Link

http://endolab.jp/wp/theme/link.html

ExPASy - ProtParam tool. タンパク質情報 (MW, pI など). PrDOS - Protein disorder prediction server. NPS@ : CONSENSUS secondary structure prediction. Multiple protein alignment and 3D-alignment. Structural Life Science Data Cloud. The RCSB Protein Data Bank. BMRB - Biological Magnetic Resonance Bank. Nat Struct. Mol. Biol. Proc Natl. Acad. Sci. USA. 京都産業大学総合生命科学部生命システム学科遠藤研究室.

d2p2.pro

Disorder

http://www.d2p2.pro/about/predictors

Details on the predictors included in the database, both protein structure and disorder. Algorithm authorship is stated where necessary, as well as a contact details for all data providers. Search Instead ». This page contains brief descriptions of the predictors included in the D. If you have any specific comments or issues with a given predictors assignments a point of contact for that data provision is linked. For more general enquiries or comments please contact Matt Oates. Li,X, Romero,P. Genome Inf...

d2p2.pro

About - Database

http://www.d2p2.pro/about/database

Search Now ». Please cite the following if you make use of D. As well as papers for any original prediction methods used. Oates,M.E., Romero,P., Ishida,T., Ghalwash,M., Mizianty,M.J., Xue,B., Dosztányi,S., Uversky,V.N., Obradovic,Z., Kurgan,L., Dunker,A.K., Gough,J. (2013). "D2P2: Database of Disordered Protein Predictions.". D1):D508-D516 DOI: 10.1093/nar/gks1226. Website, and database analysis. VLXT and VSL2b predictions. Espritz and IUPred-L predictions. VLXT and VSL2b predictions.

d2p2.pro

Downloads

http://www.d2p2.pro/download

Is the corresponding author for the database's website and dump. For specific predictors please contact the corresponding author listed on our about predictors. Page For downloading specific genome content and sequences of interest please use the " Browse. Feature to find your sequences then hit the download button at the top of the results table. All of the dump files below can be loaded into your own MySQL database. Web/database code available from GitHub. Click here for the full SQL database dump.

d2p2.pro

About - Database

http://www.d2p2.pro/about

An introduction to what you can see and do with the website. Search Instead ». Heading), by predictor (via the download. Heading), or for the complete set (via download. What is a disordered protein? All states of TSP9 PDB:2fft. A single stable helix ( black. Seperates two disordered segments (blue and green-red) of the Thylakoid soluble phosphoprotein TSP9. All known states from NMR are shown super imposed. Uversky,V.N., Gillespie,J.R., Fink,A.L. (2000) Why are natively unfolded ...Uversky,V.N. ...Iakou...

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prdos.hgc.jp

PrDOS - Protein disorder prediction server

PrDOS is a server to predict natively disordered regions of a protein chain from its amino acid sequence. PrDOS returns disorder probability of each residue as prediction results. Input protein amino acid sequences in plain text or FASTA format. The server accepts single-letter standard amino acid codes. And the code 'X' for non-standard amino acids. The codes for ambiguous amino acids. And paticular non-standard amino acids. Query amino acid sequence ( HELP. Prediction false positive rate.

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