proknow.mbi.ucla.edu

ProKnow

Website Problem: Thomas Holton. Science/Method Question: Debnath Pal. Welcome to the ProKnow server. ProKnow predicts the function of proteins from sequence or structure. Submit your protein sequence or structure for analysis below. Click here. If you would like to submit multiple sequences, use the batch submission form. Laquo; Your results will be sent to that address. M tuberculosis H37Rv (83332). Laquo; Select the species of the organism to which your protein belongs. Leave blank if unknown.

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Website Problem: Thomas Holton. Science/Method Question: Debnath Pal. Welcome to the ProKnow server. ProKnow predicts the function of proteins from sequence or structure. Submit your protein sequence or structure for analysis below. Click here. If you would like to submit multiple sequences, use the batch submission form. Laquo; Your results will be sent to that address. M tuberculosis H37Rv (83332). Laquo; Select the species of the organism to which your protein belongs. Leave blank if unknown.

<META> KEYWORDS

1 ucla mbi

2 mdash; proknow

3 tips

4 for useful tips

5 job parameters

6 your email

7 ncbi species code

8 blast type

9 psiblast

10 blast

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ProKnow | proknow.mbi.ucla.edu Reviews

https://proknow.mbi.ucla.edu

Website Problem: Thomas Holton. Science/Method Question: Debnath Pal. Welcome to the ProKnow server. ProKnow predicts the function of proteins from sequence or structure. Submit your protein sequence or structure for analysis below. Click here. If you would like to submit multiple sequences, use the batch submission form. Laquo; Your results will be sent to that address. M tuberculosis H37Rv (83332). Laquo; Select the species of the organism to which your protein belongs. Leave blank if unknown.

INTERNAL PAGES

proknow.mbi.ucla.edu

1

ProKnow: Batch Submission

http://proknow.mbi.ucla.edu/proknow/batch_submit

Molecular Biology Institure at the University of California, Los Angeles.

2

ProKnow: Helpful Tips

http://proknow.mbi.ucla.edu/proknow/tips

Scenario 1. You have known structure but unknown function. Scenario 2. You have known structure and unknown function and novel fold. Scenario 3. You have known structure and known function, but suspect that your protein does something more. Scenario 4. You have unknown structure and unknown function, and have some information on the domain boundaries. Scenario 5. You have unknown structure and unknown function, and no other information. Check the "Click here to get a description of your clues" and see wh...

3

ProKnow: Help Page

http://proknow.mbi.ucla.edu/proknow/help

Please read the submission information by clicking the relevant links in the submission page. In particular, read the " Tips. And " Known Problems. Link To know how ProKnow works you may read the paper mentioned below, or look at the poster. Pal D and Eisenberg D. (2005). Inference of protein function from protein structure. Structure 13, 121-130. PDF. Molecular Biology Institure at the University of California, Los Angeles.

4

ProKnow: The FSSP File

http://proknow.mbi.ucla.edu/proknow/fssp_files_help

The FSSP file is an output from the DALI program. For every PDB file submitted to the ProKnow program, at least one FSSP file is needed. If the PDB file has multiple domains, FSSP file for each domain need to be submitted. Please submit your PDB file to the DALI Server and use the files obtained (the FSSP files) for input into the ProKnow program. An example FSSP file (old format). An example FSSP file (new format). Molecular Biology Institure at the University of California, Los Angeles.

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UCLA-DOE Institute | Services

http://www.doe-mbi.ucla.edu/services

Biochemistry Instrumentation Core Technology Center. Bioinformatics and Computational Core Technology Center. Macromolecular Crystallization Core Technology Center. Nuclear Magnetic Resonance (NMR) Core Technology Center. X-ray Crystallography Core Technology Center. Faculty / Principal Investigators. Seminars & Meetings. Perform Ellipsoidal Truncation and Anisotropic Scaling. SAVEs v4: Structure Analysis and Verification server. Self Rotation Function Server. Transmembrane Kink Predictor (TMKink). Ident...

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Website Problem: Thomas Holton. Science/Method Question: Debnath Pal. Welcome to the ProKnow server. ProKnow predicts the function of proteins from sequence or structure. Submit your protein sequence or structure for analysis below. Click here. If you would like to submit multiple sequences, use the batch submission form. Laquo; Your results will be sent to that address. M tuberculosis H37Rv (83332). Laquo; Select the species of the organism to which your protein belongs. Leave blank if unknown.

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