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Erver) is a web server designed to evaluate and validate protein structures solved by either X-ray crystallography or NMR spectroscopy. PROSESS integrates a variety of previously developed, well-known and thoroughly tested methods to evaluate both global and residue-specific: 1) covalent and geometric quality; 2) non-bonded/packing quality; 3) torsion angle quality; 4) chemical shift quality and 5) NOE quality. In particular, PROSESS uses VADAR. For calculating chemical shift correlations, RCI. To assess...

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Erver) is a web server designed to evaluate and validate protein structures solved by either X-ray crystallography or NMR spectroscopy. PROSESS integrates a variety of previously developed, well-known and thoroughly tested methods to evaluate both global and residue-specific: 1) covalent and geometric quality; 2) non-bonded/packing quality; 3) torsion angle quality; 4) chemical shift quality and 5) NOE quality. In particular, PROSESS uses VADAR. For calculating chemical shift correlations, RCI. To assess...

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Erver) is a web server designed to evaluate and validate protein structures solved by either X-ray crystallography or NMR spectroscopy. PROSESS integrates a variety of previously developed, well-known and thoroughly tested methods to evaluate both global and residue-specific: 1) covalent and geometric quality; 2) non-bonded/packing quality; 3) torsion angle quality; 4) chemical shift quality and 5) NOE quality. In particular, PROSESS uses VADAR. For calculating chemical shift correlations, RCI. To assess...

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Global Structure Assessment Page:. Local (Per-residue) Structure Assessment Page:. The Similarity Assessment page summarizes the results of BLAST searches of the protein sequence against the PDB. Those structures with Expect values. Graphs and Figures Page:. References to Programs, Data Sources and Servers Used by PROSESS. Http:/ www.ncbi.nlm.nih.gov/pubmed/12824316. Http:/ www.ncbi.nlm.nih.gov/pmc/articles/PMC168972. Http:/ www.ncbi.nlm.nih.gov/pmc/articles/PMC1933162. Maiti, R., Van Domselaar, G&#4...

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http://www.prosess.ca/i_o_formats.html

PDB Input File Format. The PROSESS server requires either a PDB formatted file (for newly determined structures) or a PDB accession number (for previously determined structures) as input. The PDB files may consist of a single protein structure or chain or an ensemble of structures (up to 100) from an NMR structure calculation. The maximum number of residues is 10,000. Acceptable PDB formats include files with and without a PDB header. Chemical Shift Input File Format. Example #1: This is an example of a ...

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http://www.prosess.ca/tutorial.html

How can PROSESS help to evaluate protein global quality and identify local difects.). Inspect global quality categories. Identify protein parameters with poor global quality. Locate clusters of outliers. Inspect outliers of protein parameters. Step 1. Evaluate overall quality. Example of poor Overall Quality Index:. Example of good Overall Quality Index:. Step 2. Inspect global quality categories. Step 3. Identify protein parameters with poor global quality. Example of "Graphs and Figures" page layout:.

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http://www.prosess.ca/index.php

Erver) is a web server designed to evaluate and validate protein structures solved by either X-ray crystallography or NMR spectroscopy. PROSESS integrates a variety of previously developed, well-known and thoroughly tested methods to evaluate both global and residue-specific: 1) covalent and geometric quality; 2) non-bonded/packing quality; 3) torsion angle quality; 4) chemical shift quality and 5) NOE quality. In particular, PROSESS uses VADAR. For calculating chemical shift correlations, RCI. To assess...

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http://www.prosess.ca/output_formats.html

Every PROSESS output is divided into four "clickable" pages: 1) Global Structure Assessment; 2) Local (Per-residue) Structure Assessment; 3) Graphs and Figures and 4) Similarity Assessment. Global Structure Assessment - Colored Bars. Global Structure Assessment - Tabular output. Sample Covalent Quality Table. Sample Non-covalent Quality Table. Sample Torsion Angle Quality Table. Sample Chemical Shift Quality Table. Sample NOE Quality Table. Local (Per-residue) Structure Assessment Page - Tabular Output.

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Erver) is a web server designed to evaluate and validate protein structures solved by either X-ray crystallography or NMR spectroscopy. PROSESS integrates a variety of previously developed, well-known and thoroughly tested methods to evaluate both global and residue-specific: 1) covalent and geometric quality; 2) non-bonded/packing quality; 3) torsion angle quality; 4) chemical shift quality and 5) NOE quality. In particular, PROSESS uses VADAR. For calculating chemical shift correlations, RCI. To assess...

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