prote2s.csbb.ntu.edu.tw
Special Interest Group on Molecular Biomedical Informaticsdata mining and machine leaning on bioinformatics
http://prote2s.csbb.ntu.edu.tw/
data mining and machine leaning on bioinformatics
http://prote2s.csbb.ntu.edu.tw/
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Special Interest Group on Molecular Biomedical Informatics | prote2s.csbb.ntu.edu.tw Reviews
https://prote2s.csbb.ntu.edu.tw
data mining and machine leaning on bioinformatics
AH-DB » News
http://ahdb.ee.ncku.edu.tw/news.html
Onclick="return gaq link('matilto:darby@mail.ncku.edu.tw? Ase) collects apo and holo structure pairs of proteins. AH-DB has been updated according to the Protein Data Bank ( PDB. Release of 27 March 2013. Now AH-DB contains 747036 apo-holo structure pairs of 3683 proteins from 715 organisms. In addition, the statistics page has been re-designed. To see this sample in action, please click the corresponding [Load Sample] button in the AH-DB homepage. We have made a video to introduce AH-DB. Of the figure b...
AH-DB
http://ahdb.ee.ncku.edu.tw/help.html
Onclick="return gaq link('matilto:darby@mail.ncku.edu.tw? Pesudo ligands in AH-DB. Superimposition algorithms in AH-DB. Conformational transitions are commonly observed in various protein interactions which carry out important biological functions. For example, adenylate kinase (AdK), which catalyzes the phosphoryl transfer from ATP to AMP, undergoes a large conformational variation from an open state (the apo structure) to a closed state (the holo structure). Entries to pair apo and holo structures.
AH-DB
http://ahdb.csbb.ntu.edu.tw/stat.html
Onclick="return gaq link('matilto:darby@mail.ncku.edu.tw? Ase) contains 562,424 apo-holo pairs of 3,369 proteins from 677 organisms. These pairs can be categorized into two groups. The first group considers the ligand and ion mapping, namely the joint complex. Must have all the ligands and ions of the corresponding core complex. If the joint complex. Has more ligands and ions than the corresponding core complex. The extra ligands and ions would be regarded as added molecules. A integrated protein disorde...
AH-DB
http://ahdb.csbb.ntu.edu.tw/help.html
Onclick="return gaq link('matilto:darby@mail.ncku.edu.tw? Pesudo ligands in AH-DB. Superimposition algorithms in AH-DB. Conformational transitions are commonly observed in various protein interactions which carry out important biological functions. For example, adenylate kinase (AdK), which catalyzes the phosphoryl transfer from ATP to AMP, undergoes a large conformational variation from an open state (the apo structure) to a closed state (the holo structure). Entries to pair apo and holo structures.
AH-DB
http://ahdb.ee.ncku.edu.tw/stat.html
Onclick="return gaq link('matilto:darby@mail.ncku.edu.tw? Ase) contains 562,424 apo-holo pairs of 3,369 proteins from 677 organisms. These pairs can be categorized into two groups. The first group considers the ligand and ion mapping, namely the joint complex. Must have all the ligands and ions of the corresponding core complex. If the joint complex. Has more ligands and ions than the corresponding core complex. The extra ligands and ions would be regarded as added molecules. A integrated protein disorde...
AH-DB » News
http://ahdb.csbb.ntu.edu.tw/news.html
Onclick="return gaq link('matilto:darby@mail.ncku.edu.tw? Ase) collects apo and holo structure pairs of proteins. AH-DB has been updated according to the Protein Data Bank ( PDB. Release of 27 March 2013. Now AH-DB contains 747036 apo-holo structure pairs of 3683 proteins from 715 organisms. In addition, the statistics page has been re-designed. To see this sample in action, please click the corresponding [Load Sample] button in the AH-DB homepage. We have made a video to introduce AH-DB. Of the figure b...
MEDock
http://medock.ee.ncku.edu.tw/documentation.html
MEDock: a Maximum-Entropy based docking web server for efficient prediction of ligand binding sites. The MEDock ( M. Ing) web server is aimed at providing an efficient utility for prediction of ligand binding site. A major distinction in the design of MEDock is that its global search mechanism is based on a novel optimization algorithm that exploits the maximum entropy property of the Gaussian distribution. PDBQ is an extended PDB format that is used in many docking programs, e.g., AutoDock. FKBP-FK506, ...
MEDock
http://medock.ee.ncku.edu.tw/step1.cgi
Some preparation work need to be done before your submission, including hydrogen atoms recovery, charge calculation. If you have no idea about what PDBQ format is, please check here. You could use sample PDBQ files. Predicting catalytic sites based on 1-dimensional signatures. A docking web server for efficient prediction of ligand binding sites. Predicting protein secondary structures. Predicting protein binding sites with automatically extracted geometrical templates.
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