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Integrated Resource for Reproducibility in Macromolecular Crystallography

Integrated Resource for Reproducibility in Macromolecular Crystallography. This project is being funded by the Targeted Software Development. Award 1 U01 HG008424-01 as part of the BD2K (Big Data to Knowledge). Program of the National Institute of Health. The project is developing tools for "wrangling" data from protein diffraction experiments. We are also creating a growing repository of diffraction experiments used to determine protein structures in the PDB. Contributed by the CSGID.

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Integrated Resource for Reproducibility in Macromolecular Crystallography | proteindiffraction.org Reviews

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Integrated Resource for Reproducibility in Macromolecular Crystallography. This project is being funded by the Targeted Software Development. Award 1 U01 HG008424-01 as part of the BD2K (Big Data to Knowledge). Program of the National Institute of Health. The project is developing tools for wrangling data from protein diffraction experiments. We are also creating a growing repository of diffraction experiments used to determine protein structures in the PDB. Contributed by the CSGID.

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Integrated Resource for Reproducibility in Macromolecular Crystallography | proteindiffraction.org Reviews

https://proteindiffraction.org

Integrated Resource for Reproducibility in Macromolecular Crystallography. This project is being funded by the Targeted Software Development. Award 1 U01 HG008424-01 as part of the BD2K (Big Data to Knowledge). Program of the National Institute of Health. The project is developing tools for "wrangling" data from protein diffraction experiments. We are also creating a growing repository of diffraction experiments used to determine protein structures in the PDB. Contributed by the CSGID.

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$proteindiffraction.org$ proteindiffraction.org

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3256 projects

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X-ray diffraction data for the SrtA sortase from Actinomyces oris. Download all images (581.1 MB). PDB website for 5UTT. X-ray diffraction data for the Crystal structure of the phosphomannomutase PMM1 from Candida albicans, apoenzyme state. Download all images (1.6 GB). PDB website for 5UE7. X-ray diffraction data for the Crystal structure of the reduced state of the thiol-disulfide reductase SdbA from Streptococcus gordonii. Download all images (1.0 GB). PDB website for 5UM7. PDB website for 5U08. X-ray...

2

Diffraction project datasets IDP01865_3q94

https://www.proteindiffraction.org/project/IDP01865_3q94

Diffraction project datasets IDP01865 3q94. Resolution: 2.3 &#8491. Space group: P 31 2 1. Download all images (459.9 MB). NCBI website for GI:47530901. PDB website for 3Q94. The crystal structure of fructose 1,6-bisphosphate aldolase from Bacillus anthracis str. Ames Ancestor. Tan, K., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A. 017 / 0.22. Unit cell edges [Å]. 9515 x 95.15 x 155.97. Unit cell angles [°]. 900, 90.0, 120.0. Dataset IDP01865D PKa.# # .img details. 85 (1 - 85). Created by Minor lab.

3

Diffraction project datasets IDP05410_4guc

https://www.proteindiffraction.org/project/IDP05410_4guc

Diffraction project datasets IDP05410 4guc. Resolution: 1.4 &#8491. Space group: P 1. Download all images (5.8 GB). NCBI website for GI:30257128. PDB website for 4GUC. 14 Angstrom resolution crystal structure of uncharacterized protein BA 2500 from Bacillus anthracis str. Ames. Halavaty, A.S., Wawrzak, Z., Onopriyenko, O., Kwon, K., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID). 015 / 0.19. Unit cell edges [Å]. 2747 x 34.71 x 61.93. Unit cell angles [°].

4

Diffraction project datasets IDP05583_4hde

https://www.proteindiffraction.org/project/IDP05583_4hde

Diffraction project datasets IDP05583 4hde. Resolution: 1.32 &#8491. Space group: P 21 21 21. Download all images (570.5 MB). NCBI website for GI:30256893. PDB website for 4HDE. The crystal structure of a SCO1/SenC family lipoprotein from Bacillus anthracis str. Ames. Tan, K., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A. 016 / 0.19. Unit cell edges [Å]. 3499 x 48.47 x 88.55. Unit cell angles [°]. 900, 90.0, 90.0. Dataset IDP05583 PKa.# # .img details. 120 (1 - 120). Oscillation width [°].

5

Diffraction project datasets IDP90793_3rf1

https://www.proteindiffraction.org/project/IDP90793_3rf1

Diffraction project datasets IDP90793 3rf1. Resolution: 2.2 &#8491. Space group: H 3. Download all images (810.2 MB). NCBI website for GI:15792053. PDB website for 3RF1. The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC 11168. Tan, K., Zhang, R., Zhou, M., Hasseman, J., Anderson, W.F., Joachimiak, A. 017 / 0.21. Unit cell edges [Å]. 11266 x 112.66 x 158.28. Unit cell angles [°]. 900, 90.0, 120.0. Dataset IDP90793B4 PKa.# # .img details.

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krzys.med.virginia.edu

Minor Laboratory

http://krzys.med.virginia.edu/CrystUVa/index.php

List of all lab members. David Cooper, Instructor. Marcin Cymborowski, Research Assistant. Mateusz Czub, Visiting Graduate Student. Monika Grabowska, Student. Marek Grabowski, Research Scientist. Katarzyna Handing, Visiting Graduate Student. Jing Hou, Research Scientist. Cody LaRowe, Undergraduate Student. Joanna Lipowska, Visiting Graduate Student. Darryl Mason, Undergraduate Student. Dorota Matelska, Research Scholar. Ewa Niedzialkowska, Lab Specialist. Tomasz Osinski, Laboratory Specialist. Department...

csgid.org

Center for Structural Genomics of Infectious Diseases - Pages

http://www.csgid.org/pages/diffraction_images

Ligands - full list. New CSGID diffraction images should be uploaded using ftp (on Linux, command ftp -p ftp.csgid.org) as user csgid. Password may be obtained from support@csgid.org. To upload images for target nnnnn corresponding to PDB deposit 4xyz, tar uncompressed images into a single file and then compress the resulting tar file using gz or bz2 into a single file named nnnnn 4xyz.tar.gz or nnnnn 4xyz.tar.bz2. For any help please contact support@csgid.org.

olenka.med.virginia.edu

Minor Laboratory

http://olenka.med.virginia.edu/CrystUVa/index.php

List of all lab members. David Cooper, Instructor. Marcin Cymborowski, Research Assistant. Mateusz Czub, Visiting Graduate Student. Monika Grabowska, Student. Marek Grabowski, Research Scientist. Katarzyna Handing, Visiting Graduate Student. Jing Hou, Research Scientist. Cody LaRowe, Undergraduate Student. Joanna Lipowska, Visiting Graduate Student. Darryl Mason, Undergraduate Student. Dorota Matelska, Research Scholar. Ewa Niedzialkowska, Lab Specialist. Tomasz Osinski, Laboratory Specialist. Department...

iwonka.med.virginia.edu

Minor Laboratory

http://iwonka.med.virginia.edu/CrystUVa/index.php

List of all lab members. Vincent Choy, Administrative Assistant. David Cooper, Instructor. Marcin Cymborowski, Research Assistant. Mateusz Czub, Visiting Graduate Student. Monika Grabowska, Student. Marek Grabowski, Research Scientist. Jing Hou, Research Scientist. Tiffany Kim, Administrative Assistant. Cody LaRowe, Undergraduate Student. Joanna Lipowska, Visiting Graduate Student. Darryl Mason, Undergraduate Student. Dorota Matelska, Research Scholar. Dylan Miks, Undergraduate Student. E-mail: wladek@iw...

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$proteindiffraction.org$ proteindiffraction.org

Integrated Resource for Reproducibility in Macromolecular Crystallography

Integrated Resource for Reproducibility in Macromolecular Crystallography. This project is being funded by the Targeted Software Development. Award 1 U01 HG008424-01 as part of the BD2K (Big Data to Knowledge). Program of the National Institute of Health. The project is developing tools for "wrangling" data from protein diffraction experiments. We are also creating a growing repository of diffraction experiments used to determine protein structures in the PDB. Contributed by the CSGID.

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