protmod.godziklab.org

ProtMod at Godzik Lab

How does it work? Please send bugs and questions to Zhanwen Li. Thanks for your help and patience. Short Description of the Server. ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores. How to use it? Login or create an account before input your query.

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ProtMod at Godzik Lab | protmod.godziklab.org Reviews

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How does it work? Please send bugs and questions to Zhanwen Li. Thanks for your help and patience. Short Description of the Server. ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores. How to use it? Login or create an account before input your query.

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1 protein structure modeling

2 server status

3 servers

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5 sequence

6 example

7 template

8 alignment

9 document

10 what is it

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ProtMod at Godzik Lab | protmod.godziklab.org Reviews

https://protmod.godziklab.org

How does it work? Please send bugs and questions to Zhanwen Li. Thanks for your help and patience. Short Description of the Server. ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores. How to use it? Login or create an account before input your query.

INTERNAL PAGES

protmod.godziklab.org

1

Godzik Lab -- Protein Structure Modeling

http://protmod.godziklab.org/protmod/doc.html

Protein Structure Modeling - Documentation. Introduction (What and How). ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores. In ProtMod the protein modeling pipeline is implemented as a tree. The calculation of a single protein model consists of four steps:. And Query By Alignment.

2

Protein Structure Modeling - login

http://protmod.godziklab.org/protmod-cgi/qryByAliForm.pl?user=&key=

Protein Structure Modeling - login. How does it work? Please send bugs and questions to Zhanwen Li. Thanks for your help and patience. Note: You must login before submitting a query. For existing users, please login:. Username is case sensitive). Optional. Please watch for typo errors. If given, this email will replace the old email in your account). Forget your username or password? Why do I have to login? Or create a new account. Username is case sensitive).

3

Protein Structure Modeling

http://protmod.godziklab.org/protmod-cgi/underConstruction.pl

How does it work? Please send bugs and questions to Zhanwen Li. Thanks for your help and patience. Sorry: this page is under construction .

4

Protein Structure Modeling

http://protmod.godziklab.org/protmod-cgi/serverStatus.pl

Protein Structure Modeling - Server Status. How does it work? Please send bugs and questions to Zhanwen Li. Thanks for your help and patience. Or query by alignment.

5

Protein Modeling: External Servers

http://protmod.godziklab.org/protmod-cgi/displayServers.pl

Homology Methods - FFAS. A new, updated and maintained version of the Fold and Function Assignment System (FFAS). The FFAS fold assignment method is based on the profile-profile matching algorithm. The crucial part of the algorithm is the novel, two dimensional weighting scheme which takes into account the topology of the evolutionary tree of all the proteins in the homologous family. Homology Methods - suboptFFAS. Modeling Methods - Modeller. Modeling Methods - SCWRL.

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bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/servers.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Bioinformatics Web Servers and Databases. Is a new, updated and maintained version of the F. Server is a pairwise flexible protein structure alignment server. See Bioinformatics, 2003, 19(Suppl 2):II246-II255. And Nucleic Acids Res. 2014 May 16. pii: gku394. Is a database that explores the intrinsic flexibil...

bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/publication.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Porta-Pardo E, Godzik A. Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. PubMed. Thomas Hrabe, Lukasz Jaroszewski and Adam Godzik. Revealing aperiodic aspects of solenoid proteins from sequence information. Bioinformatics. 2016 Jun 9. PubMed. AIDA: ab initio domain ass...

bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/index.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Physicists, biologists and computer scientists meet together to understand proteins. If you want to know more about what (and how and why) we do, read on. See our new paper. Porta-Pardo E, Godzik A., Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. A user-driven, intera...

godziklab.org

Godzik Lab Website

http://www.godziklab.org/pages/index.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Physicists, biologists and computer scientists meet together to understand proteins. If you want to know more about what (and how and why) we do, read on. See our new paper. Porta-Pardo E, Godzik A., Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. A user-driven, intera...

bioinformatics.burnham.org

Godzik Lab Website

http://bioinformatics.burnham.org/pages/people.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. People In Godzik Lab. Sorted by Last Name. Adam Godzik, Ph.D. Bioinformatics and Systems Biology. Professor, PI, Program Director. Tel: 858-646-3100 x 3168. Tel: 858-646-3100 ext 3790. Yuanyuan Chang, Ph.D. Tel: 858-646-3100 ext 4146. Piotr Cieplak, Ph.D. Research Ass. Professor. Tel: 858-646-3100 ext 3076.

bioinformatics.burnham.org

Godzik Lab Website

http://bioinformatics.burnham.org/pages/publication.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Porta-Pardo E, Godzik A. Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. PubMed. Thomas Hrabe, Lukasz Jaroszewski and Adam Godzik. Revealing aperiodic aspects of solenoid proteins from sequence information. Bioinformatics. 2016 Jun 9. PubMed. AIDA: ab initio domain ass...

bioinformatics.burnham.org

Godzik Lab Website

http://bioinformatics.burnham.org/pages/servers.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Bioinformatics Web Servers and Databases. Is a new, updated and maintained version of the F. Server is a pairwise flexible protein structure alignment server. See Bioinformatics, 2003, 19(Suppl 2):II246-II255. And Nucleic Acids Res. 2014 May 16. pii: gku394. Is a database that explores the intrinsic flexibil...

bioinformatics.burnham.org

Godzik Lab Website

http://bioinformatics.burnham.org/pages/index.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Physicists, biologists and computer scientists meet together to understand proteins. If you want to know more about what (and how and why) we do, read on. See our new paper. Porta-Pardo E, Godzik A., Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. A user-driven, intera...

bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/people.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. People In Godzik Lab. Sorted by Last Name. Adam Godzik, Ph.D. Bioinformatics and Systems Biology. Professor, PI, Program Director. Tel: 858-646-3100 x 3168. Tel: 858-646-3100 ext 3790. Yuanyuan Chang, Ph.D. Tel: 858-646-3100 ext 4146. Piotr Cieplak, Ph.D. Research Ass. Professor. Tel: 858-646-3100 ext 3076.

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protmod.godziklab.org

ProtMod at Godzik Lab

How does it work? Please send bugs and questions to Zhanwen Li. Thanks for your help and patience. Short Description of the Server. ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores. How to use it? Login or create an account before input your query.

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