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The Rockefeller University » Laboratory of Mass Spectrometry and Gaseous Ion Chemistry

Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. ProFound is a tool for searching a protein sequence collections with peptide mass maps. A Bayesian algorithm is used to rank the protein sequences in the database according to their probability of producing the peptide map. ProteinInfo is a collection of tools for retrieval and analysis of protein sequences. The capabilities of the analysis tools include peptide mapping, mass spectrometric fragmentation analysis, disulfide mapping, etc.

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The Rockefeller University » Laboratory of Mass Spectrometry and Gaseous Ion Chemistry | prowl.rockefeller.edu Reviews

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Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. ProFound is a tool for searching a protein sequence collections with peptide mass maps. A Bayesian algorithm is used to rank the protein sequences in the database according to their probability of producing the peptide map. ProteinInfo is a collection of tools for retrieval and analysis of protein sequences. The capabilities of the analysis tools include peptide mapping, mass spectrometric fragmentation analysis, disulfide mapping, etc.

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2 directory

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The Rockefeller University » Laboratory of Mass Spectrometry and Gaseous Ion Chemistry | prowl.rockefeller.edu Reviews

https://prowl.rockefeller.edu

Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. ProFound is a tool for searching a protein sequence collections with peptide mass maps. A Bayesian algorithm is used to rank the protein sequences in the database according to their probability of producing the peptide map. ProteinInfo is a collection of tools for retrieval and analysis of protein sequences. The capabilities of the analysis tools include peptide mapping, mass spectrometric fragmentation analysis, disulfide mapping, etc.

INTERNAL PAGES

prowl.rockefeller.edu

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GPM Cyclone XE, simple search page

http://prowl.rockefeller.edu/tandem/thegpm_tandem.html

GPM Cyclone XE, Simple search page. The value set in this control determines which of the X! Series search engine will be used to identify your proteins. The choices are:. Compares spectra to full protein sequences. Compares spectra to proteotypic peptides to improve the search process. Compares spectra to annotated spectrum libraries (ASLs). Hunter are not available for all species listed below. Parameter name = spectrum, minimum cosine theta ( more . Parameter name = protein, allowed peptides. Hunter w...

2

The Rockefeller University » Laboratory of Mass Spectrometry and Gaseous Ion Chemistry

http://prowl.rockefeller.edu/prowl/prowl.html

Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. ProFound is a tool for searching a protein sequence collections with peptide mass maps. A Bayesian algorithm is used to rank the protein sequences in the database according to their probability of producing the peptide map. ProteinInfo is a collection of tools for retrieval and analysis of protein sequences. The capabilities of the analysis tools include peptide mapping, mass spectrometric fragmentation analysis, disulfide mapping, etc.

3

PROWL

http://prowl.rockefeller.edu/prowl/proteininfo.html

Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. 1230 York Avenue,. New York, NY 10021. For the Mass Spectrometric. Analyze Amino Acid Sequence.

4

PROWL

http://prowl.rockefeller.edu/prowl/pepfrag.html

Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. 1230 York Avenue,. New York, NY 10021. For the Mass Spectrometric. Examples: A singly charged peptide. A doubly charged peptide. Maximum number of proteins in result:. Maximum number of cleavage sites not cleaved in a peptide:. Mass of parent peptide. Maximum number of phosphorylations. If you know at what amino acids the fragmentation occurs (c-terminal side), list them here:. And mark the peptides with an 'x' following the mass.

5

PROWL

http://prowl.rockefeller.edu/prowl/peptidemap.html

Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. 1230 York Avenue,. New York, NY 10021. For the Mass Spectrometric. 1 * 10 * 20 * 30 * 40 * 50 1. Aspartic acid (Asp,D). Glutamic acid (Glu,E). Do not cleave near Proline. Style="WIDTH: 105px; HEIGHT: 24px" LANGUAGE=javascript onclick="return chemistry userdefined addenzyme onclick()". Performic acid (Cys O3). Performic acid (Met O2). Performic acid (Met O). Performic acid (Cys O3). Performic acid (Met O2). Performic acid (Met O). First chain = 0).

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msf.chem.indiana.edu

Links | Mass Spectrometry Facility | Indiana University Department of Chemistry

http://msf.chem.indiana.edu/links.html

Mass Spectrometry Research Groups. Dr David E. Clemmer. Dr Gary M. Hieftje. Dr Ronald A. Hites. Dr Martin F. Jarrold. Dr Milos V. Novotny. Dr James P. Reilly. Dr Phillip T. Stevens. IU Mass Spectrometry Facilities. Laboratorty for Bilogical Mass Spectrometry. Dept of Geological Sciences. American Society for Mass Spectrometry. Society for Applied Spectroscopy. Mass Spectrometry Freeware for IU Researchers. Excellent chemical software suite (IUB Only). Draw chemical structures and predict their masses.

massspec.unm.edu

UNM: Mass Spectrometry

http://massspec.unm.edu/tools.html

Skip to Main Content. University of New Mexico. 1 University of New Mexico. The MSF is physically located in Clark Hall Room 253. Office: 505 277 5329. Chemistry Lab: 505 277 1665. Lab: 505 277 5329. Fax: 505 277 2609. Group Leader, Analytical Chemistry Services. UNM Mass Spectrometry Tools. The University of New Mexico, Albuquerque, NM 87131, (505) 277-0111.

chemms.tamu.edu

Links - Department of Chemistry - Texas A&M University

http://chemms.tamu.edu/links

Skip to main content. Chemistry Mass Spectrometry Facility Department of Chemistry. Center for Chemical Characterization and Analysis. Laboratory for Molecular Simulation. Mass Spectrometry Educational Resources. What is mass spectrometry? Iostopic Compoistion of Elements - NIST. Martix Science - MASCOT. Pedro's BioMolecular Research Tools. Department of Chemistry, Texas A&M University.

www2.pel.caltech.edu

Proteome Exploration Laboratory: Links

http://www2.pel.caltech.edu/links

Proteome Interest Group at NIH. Web of Science Links. Mass Spectrometry Related Links. MASCOT Server at the PEL. MASCOT Server at Matrix Science. PICR Protein Cross-Reference Index. Molecular Weight Calculator at FU Berlin. Mass Spectrometry Company Links (Alphabetical Order).

proteome.org.au

MALDI TOF/TOF Identification - APAF - The Australian Proteome Analysis Facility

http://www.proteome.org.au/Services/Mass-Spectrometry/MALDI-MS-Analysis-for-Protein-Identification

Difference Gel Electrophoresis (DIGE). 1D NanoLC ESI MS/MS analysis for Protein Identification. 2D LC ESI MS/MS Analysis for Protein Identification. MS Analysis of Intact Protein. Sample preparation Mass Spectrometry. MALDI MS Analysis for Protein Identification. Frequently asked question on Mass Spectrometry. High Performance Liquid Chromatography (HPLC). BioPlex Bead Based Assays. High Abundance Protein Removal. Permits for Overseas Customers. APAF Staff Publications by Methodology. Suitable for large ...

msf.ucsf.edu

UCSF Mass Spectrometry Facility - Other Resources

http://msf.ucsf.edu/other_btrc.html

University of California, San Francisco. Other Biomedical Technology Research Resources. We are supported by the National Institutes of Health, National Institute of General Medical Sciences grant number P41GM103481. NIGMS BTRR Program Website. Http:/ www.nigms.nih.gov/About/Overview/BBCB/BiomedicalTechnology/Pages/BiomedicalTechnologyResearchResources.aspx. Other Related BTRR Systems Biology Technology Centers. Center for Computational Mass Spectrometry. Principal Investigator: Pavel A Pevzner, Ph.D.

biochem.caluniv.in

Department of BioChemistry Calcutta University

http://biochem.caluniv.in/index.htm

35, Ballygunge Circular Road, Kolkata - 700 019,West Bengal,India. Recognized by UGC as. Centre for Advanced Studies in Biochemistry. Department since its inception in 1956, was first ever in India to introduce a course in Biochemistry. Incidentally, the first ever enzyme assayed and named in this country is from this department. The department has historically done some well cited work in microbiology, antibiotics action mechanisms, and the antioxidant effect of Vitamin C. A number of Research Projects ...

pel.caltech.edu

Proteome Exploration Laboratory: Links

http://pel.caltech.edu/links

Proteome Interest Group at NIH. Web of Science Links. Mass Spectrometry Related Links. MASCOT Server at the PEL. MASCOT Server at Matrix Science. PICR Protein Cross-Reference Index. Molecular Weight Calculator at FU Berlin. Mass Spectrometry Company Links (Alphabetical Order).

expasy.org

ExPASy: SIB Bioinformatics Resource Portal - Proteomics Tools

http://www.expasy.org/tools

Query within a category:. Query a specific database:. Protein sequences and identification. Sequence sites, features and motifs. Please note that this page is not updated anymore and remains static. However, many of the external resources listed below are available in the category proteomics. Protein identification and characterization. Pattern and profile searches. Protein identification and characterization. Identification and characterization with peptide mass fingerprinting data. Open modification sp...

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The Rockefeller University » Laboratory of Mass Spectrometry and Gaseous Ion Chemistry

Laboratory of Mass Spectrometry and Gaseous Ion Chemistry. ProFound is a tool for searching a protein sequence collections with peptide mass maps. A Bayesian algorithm is used to rank the protein sequences in the database according to their probability of producing the peptide map. ProteinInfo is a collection of tools for retrieval and analysis of protein sequences. The capabilities of the analysis tools include peptide mapping, mass spectrometric fragmentation analysis, disulfide mapping, etc.

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