pseudofam.pseudogene.org

PseudoFam - The Families of Pseudogenes

To see the overview of the Pseudofam database, click here. To explore the Pseudofam database, click here. To download the Pseudofam data sets, click here. Pseudofam is a database of pseudogenes assigned to different protein families which currently represents a compilation of pseudogenes, as well as their families, identified from 10 eukaryotic genomes. More. Lam HY, Khurana E, Fang G, Cayting P, Carriero N, Cheung KH, Gerstein MB. Pseudofam: the pseudogene families database. Last updated:Jul 11, 2010.

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PseudoFam - The Families of Pseudogenes | pseudofam.pseudogene.org Reviews

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To see the overview of the Pseudofam database, click here. To explore the Pseudofam database, click here. To download the Pseudofam data sets, click here. Pseudofam is a database of pseudogenes assigned to different protein families which currently represents a compilation of pseudogenes, as well as their families, identified from 10 eukaryotic genomes. More. Lam HY, Khurana E, Fang G, Cayting P, Carriero N, Cheung KH, Gerstein MB. Pseudofam: the pseudogene families database. Last updated:Jul 11, 2010.

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2 at a glance

3 browse families

4 search families

5 cross families

6 documentation

7 tutorial

8 publications

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PseudoFam - The Families of Pseudogenes | pseudofam.pseudogene.org Reviews

https://pseudofam.pseudogene.org

To see the overview of the Pseudofam database, click here. To explore the Pseudofam database, click here. To download the Pseudofam data sets, click here. Pseudofam is a database of pseudogenes assigned to different protein families which currently represents a compilation of pseudogenes, as well as their families, identified from 10 eukaryotic genomes. More. Lam HY, Khurana E, Fang G, Cayting P, Carriero N, Cheung KH, Gerstein MB. Pseudofam: the pseudogene families database. Last updated:Jul 11, 2010.

LINKS TO THIS WEBSITE

pseudogenes.org

Pseudogene.org

http://www.pseudogenes.org/about.html

Pseudogenes are genomic DNA sequences similar to coding genes but without coding potential. They are regarded as defunct relatives of functional genes. What causes pseudogenes to arise? There are two accepted processes during which pseudogenes may arise:. Reverse transcription of an mRNA transcript with subsequent re-integration of the cDNA into the genome. Such copies of genes are termed processed. Pseudogenes. These pseudogenes can also accumulate random disablements over the course of evolution. Once ...

pseudogenes.com

Pseudogene.org

http://www.pseudogenes.com/pseudopipe

PseudoPipe is a homology-based computational pipeline that searches a mammalian genome and identifies pseudogene sequences. Pipeline Predictions on human genome. And other Eukaryotic genomes. Pipeline Predictions in plants:. In order to run PseudoPipe on the available plant genomes from Ensembl Plants. Please use the updated fetch file. To download the input data and then follow the instructions for the pipeline installation and execution. Example Arabidopsis-thaliana pseudogenes.

pseudogenes.com

Pseudogene.org

http://www.pseudogenes.com/Human

The current human manual annotation is available from GENCODE. The GENCODE annotation of pseudogenes contains models that have been created by the Human and Vertebrate Analysis and Annotation (HAVANA) team, an expert manual annotation team at the Wellcome Trust Sanger Institute. This is informed by, and checked against, computational pseudogene predictions by the PseudoPipe. The current PseudoPipe results are on Ensembl genome release 83. Other Human Pseudogene Sets.

pseudogenes.com

Pseudogene.org

http://www.pseudogenes.com/about.html

Pseudogenes are genomic DNA sequences similar to coding genes but without coding potential. They are regarded as defunct relatives of functional genes. What causes pseudogenes to arise? There are two accepted processes during which pseudogenes may arise:. Reverse transcription of an mRNA transcript with subsequent re-integration of the cDNA into the genome. Such copies of genes are termed processed. Pseudogenes. These pseudogenes can also accumulate random disablements over the course of evolution. Once ...

pseudogene.org

Pseudogene.org

http://pseudogene.org/index.html

Welcome to Pseudogene.org! This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase. The website is developed and maintained by Yale Gerstein Group.

pseudogenes.com

Pseudogene.org

http://www.pseudogenes.com/Mouse

The current manual mouse annotation is in GENCODE. The GENCODE annotation of pseudogenes contains models that have been created by the Human and Vertebrate Analysis and Annotation (HAVANA) team, an expert manual annotation team at the Wellcome Trust Sanger Institute. This is informed by, and checked against, computational pseudogene predictions by the PseudoPipe. The current PseudoPipe results are on Ensembl genome release 83.

pseudogene.org

Pseudogene.org

http://pseudogene.org/about.html

Pseudogenes are genomic DNA sequences similar to coding genes but without coding potential. They are regarded as defunct relatives of functional genes. What causes pseudogenes to arise? There are two accepted processes during which pseudogenes may arise:. Reverse transcription of an mRNA transcript with subsequent re-integration of the cDNA into the genome. Such copies of genes are termed processed. Pseudogenes. These pseudogenes can also accumulate random disablements over the course of evolution. Once ...

pseudogenes.com

psiCube

http://www.pseudogenes.com/psicube

Welcome to psiCube, the site for comparative analysis of pseudogene annotation, activity and evolution across human, worm and fly. Sisu et al. Comparative analysis of pseudogenes across three phyla. PNAS, 111(37):13361-6, 2014. A detailed description of the analysis on human pseudogenes from an earlier GENCODE version (version 7) can be seen in psiDr. Pseudogene annotation in human. At pseudogene loci of human, worm and fly. In multiple organisms including human, macaque, mouse, zebrafish, worm and fly.

pseudogenes.com

Pseudogene.org

http://www.pseudogenes.com/DOWNLOADS

This website maintains all the data and tools associated with previous pseudogene publications from Gerstein lab. Publications are organized by species. Please click. To see the reference, or. To see the supporting data or tools. A complete list of pseudogene publications is also available here. Sisu et al. Comparative analysis of pseudogenes across three phyla. PNAS 111(37):13361-6, 2014. Pei et al., The GENCODE pseudogene resource. Genome Biol 13:R51, 2012. BMC Genomics 10:480, 2009. Zheng et al., ...

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PseudoFam - The Families of Pseudogenes

To see the overview of the Pseudofam database, click here. To explore the Pseudofam database, click here. To download the Pseudofam data sets, click here. Pseudofam is a database of pseudogenes assigned to different protein families which currently represents a compilation of pseudogenes, as well as their families, identified from 10 eukaryotic genomes. More. Lam HY, Khurana E, Fang G, Cayting P, Carriero N, Cheung KH, Gerstein MB. Pseudofam: the pseudogene families database. Last updated:Jul 11, 2010.

pseudofam.pseudogene.org

PseudoFam - The Families of Pseudogenes

To see the overview of the Pseudofam database, click here. To explore the Pseudofam database, click here. To download the Pseudofam data sets, click here. Pseudofam is a database of pseudogenes assigned to different protein families which currently represents a compilation of pseudogenes, as well as their families, identified from 10 eukaryotic genomes. More. Lam HY, Khurana E, Fang G, Cayting P, Carriero N, Cheung KH, Gerstein MB. Pseudofam: the pseudogene families database. Last updated:Jul 11, 2010.

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