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pseudoviewer.inha.ac.kr

PseudoViewer3

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PseudoViewer3 | pseudoviewer.inha.ac.kr Reviews

https://pseudoviewer.inha.ac.kr

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LINKS TO THIS WEBSITE

dotknot.csse.uwa.edu.au dotknot.csse.uwa.edu.au

DotKnot - Manual

http://dotknot.csse.uwa.edu.au/manual.html

Input and Output Format. Code [DotKnot 1.3.2.tar.gz]. DotKnot uses pseudoknot loop entropy parameters published by Song Cao and Shi-Jie Chen in 2006. Sequences and structures used for evaluation in the papers. For comments, suggestions and reporting bugs please contact janaspe(at)csse.uwa.edu.au. We set the maximum sequence length limit for online submission to 1000 bases. For H-type pseudoknots and to 400 bases. Please provide a sequence ID for future reference. Paste your sequence in plain format.

knotseeker.csse.uwa.edu.au knotseeker.csse.uwa.edu.au

KnotSeeker - Manual

http://knotseeker.csse.uwa.edu.au/manual.html

Practical RNA folding including simple recursive pseudoknots. Exact matching under RNA base pairing rules. Toolbox for prediction and comparison of RNA secondary structures. Jana Sperschneider and Amitava Datta. KnotSeeker: Heuristic pseudoknot detection in long RNA sequences. RNA. 2008; 14(4): 630-40. For comments and suggestions contact janaspe(at)csse.uwa.edu.au. We set the maximum sequence length limit to 1000 bases. RNA Sequence (plain format):. Position: 8 . 34. For visualization of RNA secondary s...

owczarzy.net owczarzy.net

Science of nucleic acids and proteins

http://www.owczarzy.net/scienceLinks.htm

Science of nucleic acids and proteins. Nano, quantum, thermodynamic values. NIST chemical and physical databases. PseudoViewer of RNA pseudoknots. American Society for Biochemistry and Molecular Biology. Gibbs Society of Biological Thermodynamics. DNA, RNA, PROTEIN STRUCTURE AND THERMODYNAMICS. OBRC-Database of bioinformatics databases and tools. NTDB-Thermodynamic database for nucleic acids. NDB - Nucleic acid database of 3D structures. European ribosomal RNA database. PPD - Protein pKa.

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