PTGL.UNI-FRANKFURT.DE
PTGL -- The Protein Topology Graph LibraryVPLG PTGL protein graph database
http://ptgl.uni-frankfurt.de/
VPLG PTGL protein graph database
http://ptgl.uni-frankfurt.de/
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PTGL -- The Protein Topology Graph Library | ptgl.uni-frankfurt.de Reviews
https://ptgl.uni-frankfurt.de
VPLG PTGL protein graph database
ptgl.uni-frankfurt.de
PTGL -- All linear notations of a folding graph
http://ptgl.uni-frankfurt.de/linnots_of_foldinggraph.php
All protein graphs (PGs) of a chain. All folding graphs (FGs) of a PG. All linear notations of a FG. The complex graph of a multi-chain protein. Ligand-centered graphs of all ligands of a multi-chain protein. All linear notations of a folding graph. A folding graph is a. The ADJ notation: all SSEs of the protein graph are shown, order is from N-terminus (left) to C-terminus, and each edge represents a 3D contact between a pair of SSEs. So such graphs do not have a KEY notation. Select the chain and foldi...
PTGL -- Help
http://ptgl.uni-frankfurt.de/help.php
All protein graphs (PGs) of a chain. All folding graphs (FGs) of a PG. All linear notations of a FG. The complex graph of a multi-chain protein. Ligand-centered graphs of all ligands of a multi-chain protein. Please see the VPLG User Guide.
PTGL -- About
http://ptgl.uni-frankfurt.de/about.php
All protein graphs (PGs) of a chain. All folding graphs (FGs) of a PG. All linear notations of a FG. The complex graph of a multi-chain protein. Ligand-centered graphs of all ligands of a multi-chain protein. Atom and SSE contacts. Interpreting the graph images. An example for the graph types. The PTGL REST API. Using the 3D structure data from the PDB. The SSEs are defined according to the assignment of the DSSP. For the ligand versions, the explanation can be found in Schäfer et al. A Protein graph is ...
PTGL -- List of all Linear notations
http://ptgl.uni-frankfurt.de/linearnotations.php
All protein graphs (PGs) of a chain. All folding graphs (FGs) of a PG. All linear notations of a FG. The complex graph of a multi-chain protein. Ligand-centered graphs of all ligands of a multi-chain protein. List of all linear notations of the folding graphs in the database. It seems like you did not selected anything yet. Choose the graph type and the notation type above and click the search button.
PTGL -- Content overview and statistics
http://ptgl.uni-frankfurt.de/content.php
All protein graphs (PGs) of a chain. All folding graphs (FGs) of a PG. All linear notations of a FG. The complex graph of a multi-chain protein. Ligand-centered graphs of all ligands of a multi-chain protein. This page gives statistics on the current holdings of this database. The last update was done in July 2016. 5573245 Secondary structure elements (SSEs). 5635590 3D contacts between SSEs of the same chain. Number of SSEs in graphs. Number of SSEs in graphs. Number of SSEs by type.
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bioinformatik.uni-frankfurt.de
Molecular Bioinformatics - Links
http://www.bioinformatik.uni-frankfurt.de/links.html
Bachelor Bioinformatics (B.Sc.). Master Bioinformatics (M.Sc.). GBM Study Group Bioinformatics. 2014 Molecular Bioinformatics @ Goethe-University. Welcome to Molecular Bioinformatics. CEF-MC Cluster of Excellence Macromolecular Complexes. GBM Study Group Bioinformatics. The International Society for Computational Biology (ISCB). Petri-Net Book: Modeling in Systems Biology. PTGL - Protein Topology Graph Library. 2014 Molecular Bioinformatics @ Goethe-University.
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PTGL -- The Protein Topology Graph Library
All protein graphs (PGs) of a chain. All folding graphs (FGs) of a PG. All linear notations of a FG. The PTGL web server provides a database of protein secondary structure topologies. It is based on protein ligand graphs computed by the VPLG software. The PTGL uses a graph-based model to describe the structure of proteins on the super-secondary structure level. This web server allows you to search for protein motifs. Which can be detected in the graphs. It also provides standardized 2D visualizations.
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