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PTMcode 2: Home

Known and predicted PTM functional associations. Is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins. It currently contains 316,546 modified sites from 69 different PTM types which are also propagated through ortholgs between 19 different eukaryotic species. A total of 1.6 million sites and 17 million functional associations more than 100,000 proteins can currently be explored. Explore a protein pair.

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PTMcode 2: Home | ptmcode.embl.de Reviews

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Known and predicted PTM functional associations. Is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins. It currently contains 316,546 modified sites from 69 different PTM types which are also propagated through ortholgs between 19 different eukaryotic species. A total of 1.6 million sites and 17 million functional associations more than 100,000 proteins can currently be explored. Explore a protein pair.

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10 ptms of interest

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PTMcode 2: Home | ptmcode.embl.de Reviews

https://ptmcode.embl.de

Known and predicted PTM functional associations. Is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins. It currently contains 316,546 modified sites from 69 different PTM types which are also propagated through ortholgs between 19 different eukaryotic species. A total of 1.6 million sites and 17 million functional associations more than 100,000 proteins can currently be explored. Explore a protein pair.

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ptmcode.embl.de

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PTMcode 2: Help

http://ptmcode.embl.de/help.cgi

PTMcode is a web resource for known and predicted functional associations between protein post-translational modifications (PTMs) within and between proteins. In its second release it contains more than 300,000 modified sites from 69 different PTM types. PTM types are abbreviated in two/three letter code as in PTMtypes acronyms.txt. These PTMs are present in more than 100,000 proteins of 19 different eukaryotes. To install or update the Flash plugin for your browser. PTMcode. We tested the following:.

2

PTMcode 2: Home

http://ptmcode.embl.de/index.cgi

Known and predicted PTM functional associations. Is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins. It currently contains 316,546 modified sites from 69 different PTM types which are also propagated through ortholgs between 19 different eukaryotic species. A total of 1.6 million sites and 17 million functional associations more than 100,000 proteins can currently be explored. Explore a protein pair.

3

PTMcode 2: Data download

http://ptmcode.embl.de/data.cgi

The complete lists of all 15 988 098 intra-protein PTM associations and 18 727 765 PTM associations between proteins in our database can be downloaded below. The data is available in a tab separated, plain text, Gzip compressed file. PTMcode2 associations within proteins.txt.gz. PTMcode2 associations between proteins.txt.gz. This data is available under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. For commercial use, please contact biobyte solutions GmbH. Citation: Minguez P et al.

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Vls3d - PPI databases, network

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Doctoral school for therapeutic Innovation. Computational Biology and Chemistry. Protein, DNA, RNA, Glycan modeling. Protein-protein docking, template-based docking. Hotspots, Interace residues, PPI modulators. PPI databases, network. Binding pockets and ligand-pocket datasets. Peptides, antibodies, epitopes. Visualization - commercial tools. Chemistry toolkits and utilities. Manage collections - chemical space. ADMET- physchem predictions - related tools. Off-targets, drug repurposing. A module for the ...

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Bio = (a.z);. Bioinformatics development and consulting. Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. 2016 Apr 19. pii: gkw290. Interactive Tree Of Life ( http:/ itol.embl.de. The SIDER database of drugs and side effects. Kuhn M, Letunic I. Jensen LJ, Bork P. 2016 Jan 4;44(D1):D1075-9. doi: 10.1093/nar/gkv1075. The InterPro protein families database: the classification resource after 15 years. 2015 Jan; 43(Database issue). Includes a n...

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Bioinformatic Department Tools | Bioinformatics and Genomics Department at CIPF

http://prophet.bioinfo.cipf.es/tools

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PTMcode 2: Home

Known and predicted PTM functional associations. Is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins. It currently contains 316,546 modified sites from 69 different PTM types which are also propagated through ortholgs between 19 different eukaryotic species. A total of 1.6 million sites and 17 million functional associations more than 100,000 proteins can currently be explored. Explore a protein pair.

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