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Coding Monkey

Tuesday, July 19, 2011. Aside from OS threading and OO programming, I came across something of interests to me. While parsing through fasta and genbank files from the Biopython tutorial site, a few of their examples were not able to run in a python script. After looking into the error messages. i've noticed the function SeqIO.parse() takes a file object instead of the filename. I am currently utilizing python 2.6.5 and BioPython 1.53. The Codes below work well for me. From Bio import SeqIO. Those were th...

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Coding Monkey | pythonjunkie.blogspot.com Reviews

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Tuesday, July 19, 2011. Aside from OS threading and OO programming, I came across something of interests to me. While parsing through fasta and genbank files from the Biopython tutorial site, a few of their examples were not able to run in a python script. After looking into the error messages. i've noticed the function SeqIO.parse() takes a file object instead of the filename. I am currently utilizing python 2.6.5 and BioPython 1.53. The Codes below work well for me. From Bio import SeqIO. Those were th...

<META> KEYWORDS

1 coding monkey

2 biopython

3 usr/bin/env python

4 print sequ id

5 print repr sequ seq

6 print len sequ

7 fileclose

8 posted by

9 aschenbach

10 no comments

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Coding Monkey | pythonjunkie.blogspot.com Reviews

https://pythonjunkie.blogspot.com

Tuesday, July 19, 2011. Aside from OS threading and OO programming, I came across something of interests to me. While parsing through fasta and genbank files from the Biopython tutorial site, a few of their examples were not able to run in a python script. After looking into the error messages. i've noticed the function SeqIO.parse() takes a file object instead of the filename. I am currently utilizing python 2.6.5 and BioPython 1.53. The Codes below work well for me. From Bio import SeqIO. Those were th...

INTERNAL PAGES

pythonjunkie.blogspot.com

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Coding Monkey: count line including linespace

http://www.pythonjunkie.blogspot.com/2010/09/ignoring-line-space-and-count-line.html

Monday, September 27, 2010. Count line including linespace. For line in f:. Subscribe to: Post Comments (Atom). Ignoring linespace and count line. Count line including linespace. Count line without linespace. Nothing interesting about me. View my complete profile. Simple template. Powered by Blogger.

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Coding Monkey: Pythonic Concurrency

http://www.pythonjunkie.blogspot.com/2010/10/pythonic-concurrency.html

Friday, October 15, 2010. I have been fascinated by multi-threaded programs for a few years, and have never quite grasped the power of concurrency during the day of my studies at various schools. My understading of how concurrency function is by no means affluent, but my knowledge will grow in the coming weeks. In my endaevour to construct a simple application with concurrency in mind was my focus in today's topic. With my fascination with this subject matter, i shall continue with some concurrency code.

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Coding Monkey: October 2010

http://www.pythonjunkie.blogspot.com/2010_10_01_archive.html

Friday, October 15, 2010. I have been fascinated by multi-threaded programs for a few years, and have never quite grasped the power of concurrency during the day of my studies at various schools. My understading of how concurrency function is by no means affluent, but my knowledge will grow in the coming weeks. In my endaevour to construct a simple application with concurrency in mind was my focus in today's topic. With my fascination with this subject matter, i shall continue with some concurrency code.

4

Coding Monkey: BioPython

http://www.pythonjunkie.blogspot.com/2011/07/biopython.html

Tuesday, July 19, 2011. Aside from OS threading and OO programming, I came across something of interests to me. While parsing through fasta and genbank files from the Biopython tutorial site, a few of their examples were not able to run in a python script. After looking into the error messages. i've noticed the function SeqIO.parse() takes a file object instead of the filename. I am currently utilizing python 2.6.5 and BioPython 1.53. The Codes below work well for me. From Bio import SeqIO.

5

Coding Monkey: July 2011

http://www.pythonjunkie.blogspot.com/2011_07_01_archive.html

Tuesday, July 19, 2011. Aside from OS threading and OO programming, I came across something of interests to me. While parsing through fasta and genbank files from the Biopython tutorial site, a few of their examples were not able to run in a python script. After looking into the error messages. i've noticed the function SeqIO.parse() takes a file object instead of the filename. I am currently utilizing python 2.6.5 and BioPython 1.53. The Codes below work well for me. From Bio import SeqIO.

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pythonjunkie.blogspot.com

Coding Monkey

Tuesday, July 19, 2011. Aside from OS threading and OO programming, I came across something of interests to me. While parsing through fasta and genbank files from the Biopython tutorial site, a few of their examples were not able to run in a python script. After looking into the error messages. i've noticed the function SeqIO.parse() takes a file object instead of the filename. I am currently utilizing python 2.6.5 and BioPython 1.53. The Codes below work well for me. From Bio import SeqIO. Those were th...

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