quantitative.caltech.edu
BioModels Database (Caltech mirror)BioModels Database homepage
http://quantitative.caltech.edu/
BioModels Database homepage
http://quantitative.caltech.edu/
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BioModels Database (Caltech mirror) | quantitative.caltech.edu Reviews
https://quantitative.caltech.edu
BioModels Database homepage
quantitative.caltech.edu
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/noncuramodels
Browse - Non-curated models. The following fields are used to describe a model:. A unique string of characters associated with the model, which will never be re-used even if the model is deleted from the BioModels Database. The name of the model, as written in the model itself by its creator(s). The unique identifier of the reference publication describing the model, specified either as a PubMed. Identifier (PMID), or as a DOI. The date when the model was last modified.
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/path2models
Path2Models is a branch of BioModels Database dedicated to hosting models automatically generated from pathway resources, such as KEGG. Models from this branch are classified in 3 distinct categories:. Whole genome metabolism models. One can also browse those models by organism:. List of all organisms. The following search will only look for models coming from the path2models project:. Help about the search. Will be used to combine them. Double quotes ( ". The colon character ( :. Archives of all models.
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/curationtips
This document contains a set of guidelines for the curation phase of a model, that is, the analysis of the model itself and its correspondence to the publication. It is assumed that the models are already encoded in a syntactically correct form: 1) They are proper XML; 2) They comply to the SBML schema; 3) They passed the SBML consistency checks. Claim to base their model on the one by Huang and Ferrell (1996) [ BIOMD0000000009. Corresponding to RAF instead (personal communication). Check that the specie...
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/modelmonth
View - Models of the month. Each "Model of the Month" is an article which explores the biological significance of a particular model from BioModels Database. Every article includes elements such as:. The description of the model itself and its results. The biological background of the model. A brief description of the biological processes that are encoded as a mathematical model. The biological role of each of the model elements. The diseases that are caused due to the malfunction of these elements.
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/diseases
List of disease related literature based models (from the curated and non-curated branches). Those models have been annotated with terms from the Human Disease Ontology. Online Mendelian Inheritance in Man. Or International Classification of Diseases. Auer2010 - Correlation between lag time and aggregation rate in protein aggregation. Insight into the correlation between lag time and [.]. Crespo2012 - Kinetics of Amyloid Fibril Formation. A generic crystallization-like model that describe [.]. Modelling ...
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BioModels Database (Caltech mirror)
Skip to main content. Skip to local navigation. Skip to EBI global navigation menu. Skip to expanded EBI global navigation menu (includes all sub-sections). Gene Ontology categories ( new. Simulate in JWS ( ext. Models of the Month. Submit a new model. BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain. Models published in the literature.
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