o2r.info
Investigating Docker and R · o2r
http://o2r.info/2016/12/15/investigating-docker-and-R
Opening Reproducible Research is a DFG. Funded research project by Institute for Geoinformatics ( ifgi. And University and Regional Library ( ULB. University of Münster, Germany. Theme based on Hyde. Investigating Docker and R. Docker and R: How are they used together? That is the question that we asked ourself in recent weeks. In this post, we are going to share our insights with you. Thanks to Ben Marwick. The most prominent effort in this area is the Rocker project. Or follow this tutorial. That it he...
bsiranosian.com
Biotech and software companies at ISMB 2014 | Ben Siranosian
http://www.bsiranosian.com/uncategorized/biotech-at-ismb-2014
Computational discoveries from the Broad Institute and Brown University. CMap @ Broad Institute. Chromatin conformation & senescence. Monte Monster (Brown senior thesis). Tetranucleotide Usage in Mycobacteriophages. Biotech and software companies at ISMB 2014. July 21, 2014. June 10, 2016. After I graduate, I enjoyed the chance to talk with some potential employers and see what kinds of positions are available for people with a bachelors degree in comp bio. St Louis, MO) develops high performance computi...
blog.sbgenomics.com
Open Access Publishing Fees Are Reimbursed on the Platform - Seven Bridges
https://blog.sbgenomics.com/open-access-publishing-fees-are-reimbursed-on-the-platform
The Seven Bridges Platform. Open Access Publishing Fees Are Reimbursed on the Platform. July 8, 2015. Just a quick note about something we expect many of our customers will appreciate: Seven Bridges now covers the open access publishing fees for any research paper that results from work done on our platform. As Deniz Kural, our CEO, put it:. We want to do everything possible to accelerate the pace of discovery. Open is the next step of what we started with Rabix. Cancer Genomics Cloud (7).
bioconductor.org
Bioconductor - BioC 2015: Where Software and Biology Connect
http://bioconductor.org/BioC2015
BioC 2015: Where Software and Biology Connect. BioC 2015: Where Software and Biology Connect. July 21-22, 2015 (Developer Day: July 20). Fred Hutchinson Cancer Research Center, Seattle, WA. To launch an Amazon Machine Image (AMI) for this conference:. Create an Amazon Web Services (AWS) Account. If you don’t already have one. Start the instance ami-b1f221da. See the documentation for this. Make sure your security group. Has port 80 accessible. Paste the Public DNS name of your instance into a web browser.
blog.sbgenomics.com
Docker-based solutions to reproducibility in science - Seven Bridges
https://blog.sbgenomics.com/docker-based-solutions-to-reproducibility-in-science
The Seven Bridges Platform. Docker-based solutions to reproducibility in science. June 22, 2015. Seven Bridges Genomics is launching a toolkit for creating fully portable bioinformatics workflows, based on Docker. And the Common Workflow Language. With high-profile cases of data fabrication recently in the news, the New York Times asks. The case reported in the New York Times centered on a paper by Lacour and Green. The paper claimed that, remarkably, people’s attitudes towards same-sex marriage coul...
blog.sbgenomics.com
Developing an open standard for reproducible genomics pipelines - Seven Bridges
https://blog.sbgenomics.com/reproducible-genomics-pipelines
The Seven Bridges Platform. Developing an open standard for reproducible genomics pipelines. August 1, 2014. July was an exciting month for Seven Bridges Software Engineer Boysha Tijanic, who traveled from our Belgrade, Serbia office to give a presentation at ISMB 2014. Includes development of a software description schema, which in conjunction with shared tool images as docker. Containers, allows biomedical software and complete pipelines to be readily distributed, executed, and reproduced on any infras...
sbgenomics.com
Seven Bridges - Seven Bridges Genomics Funds Open Access to Bioinformatics Research
https://www.sbgenomics.com/seven-bridges-launches-open-access-funding-program
The Seven Bridges Platform. Funds Open Access to. Mdash; Seven Bridges Genomics today announced a new program to pay the open access publication fees for any publication resulting from research conducted on its platform. Under the new program, called Open, any customer can quickly submit their information to be reimbursed for their open access fees through a simple online form. We want to do everything possible to accelerate the pace of discovery. Said Deniz Kural, Seven Bridges Genomics’ CEO.
bsiranosian.com
July | 2014 | Ben Siranosian
http://www.bsiranosian.com/2014/07
Computational discoveries from the Broad Institute and Brown University. CMap @ Broad Institute. Chromatin conformation & senescence. Monte Monster (Brown senior thesis). Tetranucleotide Usage in Mycobacteriophages. Monthly Archives: July 2014. What’s in the portion of reads that don’t map to a reference? July 30, 2014. July 30, 2014. What about the small (usually 5%) portion of reads that fail to map, then? What can we learn from these reads? Can they be used for quality control or actual analyses?
