rads.uni-muenster.de

RADS

This webapplication is a proof-of-concept of the RADS-RAMPAGE algorithms ( publication in Bioinfomatics in January 2014. When using it, please keep in mind that it is still under construction. For running RADS/RAMPAGE searches in batch mode, we provide a command-line program which queries the web interface. It can be downloaded here. Move your mouse over the little yellow buttons. To get context help ]. Search for homology using domain-wise arrangements. Advanced options control panel:. Domain - dot plots.

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This webapplication is a proof-of-concept of the RADS-RAMPAGE algorithms ( publication in Bioinfomatics in January 2014. When using it, please keep in mind that it is still under construction. For running RADS/RAMPAGE searches in batch mode, we provide a command-line program which queries the web interface. It can be downloaded here. Move your mouse over the little yellow buttons. To get context help ]. Search for homology using domain-wise arrangements. Advanced options control panel:. Domain - dot plots.

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3 requires java

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5 rads algorithm

6 run rampage

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RADS | rads.uni-muenster.de Reviews

https://rads.uni-muenster.de

This webapplication is a proof-of-concept of the RADS-RAMPAGE algorithms ( publication in Bioinfomatics in January 2014. When using it, please keep in mind that it is still under construction. For running RADS/RAMPAGE searches in batch mode, we provide a command-line program which queries the web interface. It can be downloaded here. Move your mouse over the little yellow buttons. To get context help ]. Search for homology using domain-wise arrangements. Advanced options control panel:. Domain - dot plots.

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bornberglab.org

Links - Bornberglab - Bioinformatics at the IEB

http://www.bornberglab.org/links

Groups working in Bioinformatics, omics, and related areas at the WWU. Public and Group wiki. VBio (e.V.) - Sektion Evolutionäre Genomik. Journal club/Group seminar series. Expressed sequence tags (ESTs). Rapid Motif-Based Prediction of Circular Permutations in Multi-Domain Proteins. Predict Leucine Zippers in your amino acid sequence. Software for domain-centric analysis of proteins. Search for homology using domain-wise arrangements.

domosaics.net

DoMosaics Documentation

http://www.domosaics.net/docs/index.html

Using the jar file. Annotate domains with InterProScan. Annotate domains using HMMSCAN. Find Similar arrangements using RADS. Create a tree based on sequences. Create a tree based on domains. Most proteins are comprised of smaller (structural) modules -. The evolution of proteins involves the re-arrangement, loss or gain of protein domains in a process referred to as modular evolution. A tool for creating publication-ready visualizations of domain arrangements and phylogenetic trees. A tool for annot...

domosaics.net

DoMosaics Quickstart

http://domosaics.net/docs/quickstart.html

This document is meant as an entry point for new users. We provide an example dataset in the program (which is available under the main menu - "Help" - "Load example dataset"). For more detailed information consult the main documentation. 1 - Import new data. Figure 1: Create a new project. Figure 2: Add sequence data to new project. 2 - Sequence view. You can also add a sequences to an. Project. Once the file is loaded, you will see a sequence view. Note:. Sequences can also be loaded into a project usi...

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rads.uni-muenster.de

RADS

This webapplication is a proof-of-concept of the RADS-RAMPAGE algorithms ( publication in Bioinfomatics in January 2014. When using it, please keep in mind that it is still under construction. For running RADS/RAMPAGE searches in batch mode, we provide a command-line program which queries the web interface. It can be downloaded here. Move your mouse over the little yellow buttons. To get context help ]. Search for homology using domain-wise arrangements. Advanced options control panel:. Domain - dot plots.

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