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Parallel Algorithm for Phylogeny

Parallel Algorithm for Phylogeny. Saturday, 10 July 2010. Tree of life algorithmic challenge part 1. Five steps of tree of life generation. 1) Gather data on species to be compared. Gather DNA information: For this project genome databases will be queried for DNA sequences. 2) Align DNA sequences. Use string comparison algorithm to align DNA - String Edit for a O (2 N) comparison series. Http:/ www.cs.princeton.edu/courses/archive/spr05/cos126/assignments/sequence.html. 3) Build multitude of trees. Neigh...

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Parallel Algorithm for Phylogeny. Saturday, 10 July 2010. Tree of life algorithmic challenge part 1. Five steps of tree of life generation. 1) Gather data on species to be compared. Gather DNA information: For this project genome databases will be queried for DNA sequences. 2) Align DNA sequences. Use string comparison algorithm to align DNA - String Edit for a O (2 N) comparison series. Http:/ www.cs.princeton.edu/courses/archive/spr05/cos126/assignments/sequence.html. 3) Build multitude of trees. Neigh...
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Parallel Algorithm for Phylogeny | razorwire-phylogeny.blogspot.com Reviews

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Parallel Algorithm for Phylogeny. Saturday, 10 July 2010. Tree of life algorithmic challenge part 1. Five steps of tree of life generation. 1) Gather data on species to be compared. Gather DNA information: For this project genome databases will be queried for DNA sequences. 2) Align DNA sequences. Use string comparison algorithm to align DNA - String Edit for a O (2 N) comparison series. Http:/ www.cs.princeton.edu/courses/archive/spr05/cos126/assignments/sequence.html. 3) Build multitude of trees. Neigh...

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Parallel Algorithm for Phylogeny: June 2010

http://razorwire-phylogeny.blogspot.com/2010_06_01_archive.html

Parallel Algorithm for Phylogeny. Friday, 11 June 2010. Introduction to Phylogeny part 4. Still sourcing from Evolution 2nd edition. Alignment must be used to establish the homology of sequences". 1) with four nucleotides it is highly probably that two of the nucleotides will be the same just do to mutation. Even after a sequence has been align homoplasy is common (sequence that are similar for reasons other than recent shared ancestry). Homoplasy can be reduced but not elimiated by careful selection...

2

Parallel Algorithm for Phylogeny: The basics of parallel computing

http://razorwire-phylogeny.blogspot.com/2010/06/basics-of-parallel-computing.html

Parallel Algorithm for Phylogeny. Monday, 7 June 2010. The basics of parallel computing. A simple way of understanding a serial process is to think of a librarian putting away 100 books that have just been returned to the library. If the time it takes to shelve one book is called one unit of time then it will take one librarian 100 units of time to shelve all the books. What is speed up and how do we measure it? 100/10 = 10 so the speed up of adding 9 librarians is 10. 100/1 = 100 speed up. Number of ins...

3

Parallel Algorithm for Phylogeny: Definitions

http://razorwire-phylogeny.blogspot.com/2010/06/definitions.html

Parallel Algorithm for Phylogeny. Monday, 7 June 2010. I have just been given my final year project: Parallel Alorithms for Phylogeny. What are parallel algorithms? A parallel algorithm is one that breaks a larger problem into distinct subproblems and then solves them using an array of processing units instead of doing the whole problem on one CPU. What is my goal? Subscribe to: Post Comments (Atom). Bughfield Common, Reading, United Kingdom. Dad, Gamer, Student. Californian ex-pat in the UK.

4

Parallel Algorithm for Phylogeny: Tree of life algorithmic challenge part 1

http://razorwire-phylogeny.blogspot.com/2010/07/tree-of-life-algorithmic-challenge-part.html

Parallel Algorithm for Phylogeny. Saturday, 10 July 2010. Tree of life algorithmic challenge part 1. Five steps of tree of life generation. 1) Gather data on species to be compared. Gather DNA information: For this project genome databases will be queried for DNA sequences. 2) Align DNA sequences. Use string comparison algorithm to align DNA - String Edit for a O (2 N) comparison series. Http:/ www.cs.princeton.edu/courses/archive/spr05/cos126/assignments/sequence.html. 3) Build multitude of trees. Neigh...

5

Parallel Algorithm for Phylogeny: July 2010

http://razorwire-phylogeny.blogspot.com/2010_07_01_archive.html

Parallel Algorithm for Phylogeny. Saturday, 10 July 2010. Tree of life algorithmic challenge part 1. Five steps of tree of life generation. 1) Gather data on species to be compared. Gather DNA information: For this project genome databases will be queried for DNA sequences. 2) Align DNA sequences. Use string comparison algorithm to align DNA - String Edit for a O (2 N) comparison series. Http:/ www.cs.princeton.edu/courses/archive/spr05/cos126/assignments/sequence.html. 3) Build multitude of trees. Neigh...

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Parallel Algorithm for Phylogeny

Parallel Algorithm for Phylogeny. Saturday, 10 July 2010. Tree of life algorithmic challenge part 1. Five steps of tree of life generation. 1) Gather data on species to be compared. Gather DNA information: For this project genome databases will be queried for DNA sequences. 2) Align DNA sequences. Use string comparison algorithm to align DNA - String Edit for a O (2 N) comparison series. Http:/ www.cs.princeton.edu/courses/archive/spr05/cos126/assignments/sequence.html. 3) Build multitude of trees. Neigh...

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